Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g3043 ATGGATTCTTCTAGGGAAGACCTGCACCACCTCTTATCGGAGCAACGCCGCGAGCTCACGGCGGCGCAAGCCCTAGAATCTGACCTCGAATTCGCCTACCGCCTCCAATTAGAGGAAGCCCTCGCTGCTTCCCTCGCCTCTCATCCTTCCTCCTCTACTCCACAACGACAACCACCACCCCTTATCCCCCAAAACGACGACGTCGTTTTAACCGCCTCGTCACTCCAGGCCGATGAGTTCGCCAAGCTCGAGCAAGAGCTCAACGACCGCCACCACAGTGAAGCTGAGGCCCGAAGGATTAACCTCGATCTCAACCGTCGGATCCACGATCAGAAGGTCGCAACGCAGATCCTCAGGATCCCCGAAGATGATTGGATCGAATGGGGCGATAATTTCGAGAAGCCATTTGGCGAGGGTTCGTCGAAGAACGTGGGCAATTTGGGAATTTTATTCGATGATTTTTTAGACGACGGCGACGACGACGACGACGATGATGATGATGAAGGTGCCGTTTTTAGGATTTATTTCAAGGGTTTGGTGAACAATGAGGAGGAGGGTGATGGGAAGATGAAGAGGAACGGTCAGAGGGTTGGTTTGGCTGGAATTGGGGTTGCGATTTGCGACCCTAAAGATAATTTGATCATGGAAGTGAAGAAGCCGTTGGTTGGGTTCGGAACGAGCAAGATTGTTGCGGATCTTAAGGCTTTGATTGAAGCTTTAAACGCGGCGATTGCTTTGGACTTGAAGCGCGTCATCTATTTCTGTGATTACTATCCCTTGTTCCAATATATGACTGGAAAATGGCCTGTGAAACAGAGAAAGATTGGTGTGCTAGTTAATCAGGTGAATCTTCTGGAGAGAAAATTTACACTCTGTTCTCCAAGGCTCTTGGCAAGACATGCTGTCAAGTTTGCATTTAAGTTCGCGAAAGATGCAATCGTTGCTCAGTTGACGAAGCCTGCAGAATCTAGCAGTAGAAATATTCTGAATGAAACTTGTGTCATATGTTTGGAGGACACTGATACCAATCGTATTTTTTCAGTTGATGGCTGTCAACACCGCTATTGCTATTCTTGCATGAAACAACATGTGGAGGTGAAGTTGCTTCATGGGATGGTGCCAAAATGCCCTCATGAAGGATGCAATTCTGAGCTTCTTGTTGACAGCTGCAAGAAATTCTTGACAAATAAATTAGTTGAGACCATGGAGCTACGGAAATTGGAAGCTTCAATTCCTATTACTGAGAAAGTTTATTGTCCTTATCCAAGATGCTCTGCATTGATGAGAAAAACTGAGCTTTTTGAGTACTCCAAACATCTTATTGGTGACTCTGTACAGTTAGGACCCAAGAAATGCATAAAATGTCATGGTCTCTTCTGTTTCGGCTGCAAGGTCCCTTGGCATAGTGGCATGACATGCAGTACTTACAAAAGGATGAATCCTAACCCTCCTGCTGAAGATGTGAAGCTGAAGTTTTTGGCATCAAGGAGTCTATGGCGGCAGTGTGTGAAGTGTAACCATATGATCGAACTCGCCGAAGGCTGCTATCACATGACTTGCAGATGTGGATATGAATTTTGCTATAACTGTGGAGCTGAGTGGAAGAACAAAAAGGCAACATGTTCTTGCCCACTTTGGGCCGAGGATAATATCTGGTTTGAGGATCAAGACAGGTATTCAGATGAAGAAGATGAAGATGATGATTATTATGACTCTGACTATTCAGATGGTTTTTATTAG 1740 0.4575 MDSSREDLHHLLSEQRRELTAAQALESDLEFAYRLQLEEALAASLASHPSSSTPQRQPPPLIPQNDDVVLTASSLQADEFAKLEQELNDRHHSEAEARRINLDLNRRIHDQKVATQILRIPEDDWIEWGDNFEKPFGEGSSKNVGNLGILFDDFLDDGDDDDDDDDDEGAVFRIYFKGLVNNEEEGDGKMKRNGQRVGLAGIGVAICDPKDNLIMEVKKPLVGFGTSKIVADLKALIEALNAAIALDLKRVIYFCDYYPLFQYMTGKWPVKQRKIGVLVNQVNLLERKFTLCSPRLLARHAVKFAFKFAKDAIVAQLTKPAESSSRNILNETCVICLEDTDTNRIFSVDGCQHRYCYSCMKQHVEVKLLHGMVPKCPHEGCNSELLVDSCKKFLTNKLVETMELRKLEASIPITEKVYCPYPRCSALMRKTELFEYSKHLIGDSVQLGPKKCIKCHGLFCFGCKVPWHSGMTCSTYKRMNPNPPAEDVKLKFLASRSLWRQCVKCNHMIELAEGCYHMTCRCGYEFCYNCGAEWKNKKATCSCPLWAEDNIWFEDQDRYSDEEDEDDDYYDSDYSDGFY* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g3043 579 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 32 554 IPR031127 GO:0004842|GO:0016567
Aev04g3043 579 Gene3D - 186 319 IPR036397 GO:0003676
Aev04g3043 579 Pfam Reverse transcriptase-like 195 312 IPR002156 GO:0003676|GO:0004523
Aev04g3043 579 ProSiteProfiles TRIAD supradomain profile. 329 553 IPR044066 -
Aev04g3043 579 SUPERFAMILY RING/U-box 332 412 - -
Aev04g3043 579 SUPERFAMILY RING/U-box 414 478 - -
Aev04g3043 579 Pfam IBR domain, a half RING-finger domain 492 541 IPR002867 -
Aev04g3043 579 Pfam IBR domain, a half RING-finger domain 415 473 IPR002867 -
Aev04g3043 579 MobiDBLite consensus disorder prediction 559 579 - -
Aev04g3043 579 ProSitePatterns Zinc finger RING-type signature. 351 360 IPR017907 -
Aev04g3043 579 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 32 554 - -
Aev04g3043 579 SUPERFAMILY RING/U-box 487 550 - -
Aev04g3043 579 SUPERFAMILY Ribonuclease H-like 191 287 IPR012337 -
Aev04g3043 579 SMART ibrneu5 400 473 IPR002867 -
Aev04g3043 579 SMART ibrneu5 474 543 IPR002867 -
Aev04g3043 579 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 329 412 IPR013083 -
Aev04g3043 579 ProSiteProfiles Zinc finger RING-type profile. 333 377 IPR001841 -
Aev04g3043 579 Gene3D - 470 574 - -
Aev04g3043 579 MobiDBLite consensus disorder prediction 559 573 - -
Aev04g3043 579 MobiDBLite consensus disorder prediction 46 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g3043 Aev-Chr4 30157550 30160800 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g3043 171 532 C3H Transcription Factor Family AT2G19610 31.880 1.04e-57 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g3043 - - ahf:112736554 854.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev04g3043 04 30157550 30160800 Aev04g3043 04 30157550 30160800 ECH