Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g3017 ATGGCGGAGCCTATTCCCAACGACGAACTATCCCCCTCTAAAACCCTAAGCCCAATCAACGGTCACGATTCTACCGTCGAATTGAATCCAACGGCTCCAGATGACTCTCTAACCCACACTGAAAACCAAGTTCCGGACGCTGCACCTCAAAACGACGCCGTTCAAGGGGAGAAACGTAAGAGAGAAGATGCCGGAGAGGGAGACGGCGAAGTCGGTGATGGCGCCGGCGGCGAAGATCGTTCCCTTCATCCTCTATGGAAGACCAGCCTCTGCTCGTACTTCAGGCGCAATGATGGTTCCTGCAGCCACGGCGACACGTGCCGATTCGCGCACGGCGAGGAGGAGCTTCGTCCCCGCCCTGACAACACGTGGGATCCGACCTCGGAGCGAGCGAAGAAGGCGTTGAAGTCTGAAACCGGCGAGAGGCGCGATGTATCGGACGGCGTGATGATGACAGAGGCCGTGGTCGATGACGGCGACGGCGCTGACGGCGATGGCGACGACGGTGGATCCAACCATGAACTCAGCAAGTGCTTGGTGCATTTGCCGAGGAAGTGGATATCTGAGAATCTGAGGAATTTTCTCAACGATGAGGGTATACGGTTTAAGCATGCGAAGAAAAAGAAAGGCATGATGGTAGGTTTCGTTACGTTTGAAGATGAAGAACAAATGGAGAGTTCATCGAAGGATCTAGACGGAAAATCGATTGGCAATAAAAGGGTGAAGGTTGCTGATGTTATTCCTCGATCATTTGAAAAGAAAGGTAACTCCAATGTGGCTTCCCATCAAGGAACCCAACAAAATGAAGGAGTCGAAGGTGATTTAAATGTGGCGTTGGATGGTGAAACAAATGAGGATAATTTGGCAGCAGATGGTTCCTTGTCGAAGACAAAGAGCGTGCGGGATGTAGTGACTCCTCTAGCTCATATGGCTTATGCTGATCAGCTGGAGCAGAAAAAGAACTCAATCATGCAGATGCTCAAAAGACTCACCAGAAATGCTCGTAAAGCTTGTCAAAATGGTGTTCCGCTTCCTGAATGGGTTCTCAAGTCTAGAGAAATAGGTGGTCTTCCATGCAACCTAGAGGGTATTATTGCATCACCAATCGTTAATGGATATCGTAATAAGTGTGAATTTTCAGTTGGATATTCTCTGGAAGGCAAAGTTACAGCCGGCTTCATGCTTGGAAACTTCAGGGAGGGTGTGACAGCTGTTGAGGAAGCAGTGGACTGCCCAAATGTTTCCACAATTGCTTGCAAGTATGCTACTATCTTTCAGGAATTTCTGCAGCATTCTGATTTACCAGTTTGGAACAGATTTAAAAATTCGGGTTTCTGGCGTCAATTAACGGTTCGAGAGGGGAGGACAAATGGTAATGTTGTTGATGCTGAAACTTTTGGCAGTATTGCAGAGGTCATGCTTATTGTGCAGGTTTCTACTGCTGGCTTTGATGATGCACAAGTATCTGCTGAATTTAAGAGGCTTGCTCAGGCATTTGTTGCTGGAGCTGCTTCACATTGTCTTGCATTGCCTCTGACAGCTCTGGTTGTACAGGATCACCAAGGAATATCCAATGTAGCACCAGCTGATGCACCACTGCGTTTACTTTCCATTGCCAAAACAGAAGGTGATCCTGAGATGGATGAAAACAAAAATGCCATGGATGTAAGAGTCCATGATTATATCAGCAATCTAAAGTTCTCTATATCACCAACAGCATTCTTTCAGGTTAACACACTTGCTGCTGAGAAGTTATACTCACTTGCTGGAGACTGGGCATGCTTAGGTCCTGATACATTGCTTTTTGATATATGCTGTGGGACAGGAACAATTGGCTTGACGTTAGCACATCGAGTTGGTATGGTGATTGGAATTGAAATGAACGCTTCTGCAGTAGCTGATGCTCATAGGAATGCTGAAATTAATGGCATAAAAAATTGTAGATTCATATGTTCAAAGGCGGAGGACGTGATGGGATCTCTTTTAAAGGAATACCTAAATGTGCCTAAGGAACAAGTTGATGATCCTGATGTCTCTGGAGGCAGCGATGATGTTTCCAACGGCGGTGCTTGCCAAGAGCCTGAAAGCGGTGAAATGGCATCTCATAGTTCAGAAAACGGTGAAGATGGAAGTGAGGCTAAGAATGGTTGCAATTCTGAAAACGGGAATACTTCGGCACAACACTTCAAAAATGTTGTTGCTATTGTTGATCCTCCGCGTGCTGGACTTCATCCAACTGTTATCAAAGCTTTGAGAACTCATCCTCGGCTCCGAAGGCTTGTTTACATATCCTGTAATCCTGAAACTTTGGTGGCAAATGCTATTGAACTCTGTACACCATCTCCCGCAACGATTGAGAAAGGAAATAAAGACAACAGGAAATGGAGAAAAATGAGCAGCGCGGGTCTAGCGCGGCATCGAGCCAAGTCCATGCCCATCTCAGAGGCCTTCCAACCCATAAAAGCCATGGCTGTTGATCTTTTTCCACACACTCTACATTGTGAATTGGTCATGCTTCTTGAACGGTAA 2529 0.4662 MAEPIPNDELSPSKTLSPINGHDSTVELNPTAPDDSLTHTENQVPDAAPQNDAVQGEKRKREDAGEGDGEVGDGAGGEDRSLHPLWKTSLCSYFRRNDGSCSHGDTCRFAHGEEELRPRPDNTWDPTSERAKKALKSETGERRDVSDGVMMTEAVVDDGDGADGDGDDGGSNHELSKCLVHLPRKWISENLRNFLNDEGIRFKHAKKKKGMMVGFVTFEDEEQMESSSKDLDGKSIGNKRVKVADVIPRSFEKKGNSNVASHQGTQQNEGVEGDLNVALDGETNEDNLAADGSLSKTKSVRDVVTPLAHMAYADQLEQKKNSIMQMLKRLTRNARKACQNGVPLPEWVLKSREIGGLPCNLEGIIASPIVNGYRNKCEFSVGYSLEGKVTAGFMLGNFREGVTAVEEAVDCPNVSTIACKYATIFQEFLQHSDLPVWNRFKNSGFWRQLTVREGRTNGNVVDAETFGSIAEVMLIVQVSTAGFDDAQVSAEFKRLAQAFVAGAASHCLALPLTALVVQDHQGISNVAPADAPLRLLSIAKTEGDPEMDENKNAMDVRVHDYISNLKFSISPTAFFQVNTLAAEKLYSLAGDWACLGPDTLLFDICCGTGTIGLTLAHRVGMVIGIEMNASAVADAHRNAEINGIKNCRFICSKAEDVMGSLLKEYLNVPKEQVDDPDVSGGSDDVSNGGACQEPESGEMASHSSENGEDGSEAKNGCNSENGNTSAQHFKNVVAIVDPPRAGLHPTVIKALRTHPRLRRLVYISCNPETLVANAIELCTPSPATIEKGNKDNRKWRKMSSAGLARHRAKSMPISEAFQPIKAMAVDLFPHTLHCELVMLLER* 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g3017 842 MobiDBLite consensus disorder prediction 53 77 - -
Aev04g3017 842 MobiDBLite consensus disorder prediction 672 723 - -
Aev04g3017 842 Gene3D - 78 119 - -
Aev04g3017 842 SUPERFAMILY CCCH zinc finger 83 118 IPR036855 GO:0046872
Aev04g3017 842 MobiDBLite consensus disorder prediction 252 272 - -
Aev04g3017 842 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 101 842 IPR045850 -
Aev04g3017 842 MobiDBLite consensus disorder prediction 1 82 - -
Aev04g3017 842 MobiDBLite consensus disorder prediction 254 272 - -
Aev04g3017 842 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 86 113 IPR000571 GO:0046872
Aev04g3017 842 Coils Coil 313 333 - -
Aev04g3017 842 ProSitePatterns RNA methyltransferase trmA family signature 1. 737 769 IPR030390 -
Aev04g3017 842 MobiDBLite consensus disorder prediction 10 49 - -
Aev04g3017 842 Pfam Methyltransferase domain 601 660 IPR025714 -
Aev04g3017 842 ProSiteProfiles Zinc finger C3H1-type profile. 85 114 IPR000571 GO:0046872
Aev04g3017 842 SUPERFAMILY RNA-binding domain, RBD 181 255 IPR035979 GO:0003676
Aev04g3017 842 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 303 842 IPR010280 GO:0006396|GO:0008173
Aev04g3017 842 Gene3D Vaccinia Virus protein VP39 538 841 IPR029063 -
Aev04g3017 842 CDD AdoMet_MTases 603 657 - -
Aev04g3017 842 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE HOMOLOG A 101 842 - -
Aev04g3017 842 Pfam tRNA (Uracil-5-)-methyltransferase 729 777 IPR010280 GO:0006396|GO:0008173
Aev04g3017 842 SMART c3hfinal6 85 113 IPR000571 GO:0046872
Aev04g3017 842 CDD RRM_SF 178 243 - -
Aev04g3017 842 Gene3D - 178 247 IPR012677 -
Aev04g3017 842 MobiDBLite consensus disorder prediction 114 145 - -
Aev04g3017 842 MobiDBLite consensus disorder prediction 697 723 - -
Aev04g3017 842 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 305 842 IPR029063 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aev04g3017 tRNA_U5-meth_tr 3e-08 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g3017 K15332 - pvy:116105054 1092.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev04g3017 04 29943068 29948492 Aev04g3017 04 29943068 29948492 ECH