Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g3016 ATGAGTTCTGAGGAAAAGCTTGCGACTTTGGCTCAACAACAACAACATGATGATGATGCAGGTTCTTGCAGAAGAACAGTTTCTCTACCAGCTCAAATGGTTGATGATCCAATGGGGATAATTGAAGAAATCTCACATGTTCCTCCGCGGAAGCGACAGAATCTTCTCCTTGAAATACCCTCAAGAACAGCAGAAGAGTGCTCTCAAGATTCTGTGGTGATCAAAATGCCAATGACACCAAGCCCAACTCCCACCGCGAAGAGAGTGAATTTTCTTGTAACTTCTCGCTCAGTTGATTCTCCTGTACATATTTCTCCTGGACCTTCAACATCAAAGGGAAAATCGTCCATAAGAAACATCTTACCAAAATTGAGCTTCAGGTATTGGCCGCCATCAGATGTTGAAAAGGGTACTACTACAGCTTCTGAAGCTTCCACTTCAGGGCATCGCGAAAAGCCTTCAATCTCAAGATCATTGTCCCTTAGTAAGATATTTACTCCTAGGATTAAGAGAACATCATCATTACCACTGGAAGAAATTGGACATTCACACAGTGAATCTGCTCATGGTGGAAGTGTTGGCAGTTCTCTAAATAAAGGACTGCCTCAGCGAAAGATAGCTCGCTCTCTTTCAGTGCCTGCCAACAATCAAGATAAAAGCCTAAGGAGGATGGATTCATTTTACCGAGTTATTTCTTCCACTCCTCGAGTAAGGAATGGAATTGAACCGTTGACCACATCCCCAACAACTGAAAATGACGACGACGATGATGATGGTGAAGATATACCTGAAGAAGAGGCTATGTGTAGAATTTGTCTGGTTGATCTCTGTGAAGGAGGTGAAACCTTCAAATTGGAATGCAGCTGCAAAGGGGAACTTGCTCTGGCTCACCAAGAATGTGCCATTACATGGTTTAGTATCAAGGGTAACAAGACCTGTGATGTATGCAAGGAGGATGTTCGAAACCTTCCTGTGACTTTAACACGGATTGAAAGTGTTCAAATTCAGAATACTGGAGCAAGTAGGTTTCAGCAGGAAGATCTTAATATAAATATATTCAGGGCTTGGCAGGAAGTTCCAGTGCTTGTCATTGTCAGCACGCTTGCCTATTTCTGTTTTCTAGAGCAGCTATTGGTTGGTAAAATGGGAGCGGGTGCGATTGCCATATCTCTTCCATTTTCCTGTGTGCTGGGCCTTCTGTCCTCTATGACATCAGCGATCATGGTGATGAGCCGGTTCATCTGGATTTATGCATCTGCTCAATTTGCTATGGTGGTTCTCTTCGCGCATATATTTTTCTCCGTGATTCAAGTGCAAGCAGTTGTGTCGATCTTTCTCGCGACGTTATCAGGTTTTGGTGCGGTGATGGGTGGAAGTACTATTCTTGTCGAGTTTTTTACATGGAGACGAAGATGGCAGCAGCAACAAGTTCCTCAACTGATGACACAGCCTCAAACTGCAAACACACCGTATCCAACACCGGAGCCAACCCCTCCTAGTGAAAGTCAAACTGCGGCGCTGCCAAATCAACCGGACTCAAATCAGAGCTGA 1551 0.4423 MSSEEKLATLAQQQQHDDDAGSCRRTVSLPAQMVDDPMGIIEEISHVPPRKRQNLLLEIPSRTAEECSQDSVVIKMPMTPSPTPTAKRVNFLVTSRSVDSPVHISPGPSTSKGKSSIRNILPKLSFRYWPPSDVEKGTTTASEASTSGHREKPSISRSLSLSKIFTPRIKRTSSLPLEEIGHSHSESAHGGSVGSSLNKGLPQRKIARSLSVPANNQDKSLRRMDSFYRVISSTPRVRNGIEPLTTSPTTENDDDDDDGEDIPEEEAMCRICLVDLCEGGETFKLECSCKGELALAHQECAITWFSIKGNKTCDVCKEDVRNLPVTLTRIESVQIQNTGASRFQQEDLNINIFRAWQEVPVLVIVSTLAYFCFLEQLLVGKMGAGAIAISLPFSCVLGLLSSMTSAIMVMSRFIWIYASAQFAMVVLFAHIFFSVIQVQAVVSIFLATLSGFGAVMGGSTILVEFFTWRRRWQQQQVPQLMTQPQTANTPYPTPEPTPPSESQTAALPNQPDSNQS* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g3016 516 MobiDBLite consensus disorder prediction 478 516 - -
Aev04g3016 516 MobiDBLite consensus disorder prediction 1 25 - -
Aev04g3016 516 ProSiteProfiles Zinc finger RING-CH-type profile. 261 323 IPR011016 GO:0008270
Aev04g3016 516 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 23 486 - -
Aev04g3016 516 SMART ringv_2 268 317 IPR011016 GO:0008270
Aev04g3016 516 CDD RING_CH-C4HC3_MARCH 269 317 - -
Aev04g3016 516 MobiDBLite consensus disorder prediction 502 516 - -
Aev04g3016 516 SUPERFAMILY RING/U-box 265 319 - -
Aev04g3016 516 MobiDBLite consensus disorder prediction 132 159 - -
Aev04g3016 516 MobiDBLite consensus disorder prediction 238 261 - -
Aev04g3016 516 MobiDBLite consensus disorder prediction 135 159 - -
Aev04g3016 516 PANTHER OS02G0165000 PROTEIN 23 486 - -
Aev04g3016 516 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 324 IPR013083 -
Aev04g3016 516 MobiDBLite consensus disorder prediction 1 17 - -
Aev04g3016 516 Pfam RING-variant domain 269 316 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g3016 Aev-Chr4 29929048 29933362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g3016 255 323 C3H Transcription Factor Family AT2G37950 50.000 1.45e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g3016 - - gmx:100815566 654.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev04g3016 04 29929048 29933362 Aev04g3016 04 29929048 29933362 ECH
Aev10g1904 10 20523988 20526867 Aev04g3016 04 29929048 29933362 PCT