Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g3000 ATGAAGGAAGGTGAGAAGAGCTTGGATCCGCAGCTATGGCACGCGTGTGCTGGTGGAATGGTCCAGATCCCTCAGGTGAACACCAAAGTCTTCTACTTTCCACAAGGGCATGCAGAACACGCTCAAACTAGTATCGATCTTTCAGCTTCTTCAATGAGGGTTCCGCCGCTCATCCCATCCAGAGTAGCATCGGTGAAATTCATGGCAGACCCAGAAACCGATGAGGTTTTCGCAAAGATAAAGCTCATTCCCTTGAAAAGCTCCGAGCTTGATGAAGGAAACGACACCGTTTTGGACGGTGAAGCTATTGAGAATAAGGAAAAGCCTGCATCTTTTGCTAAGACCCTGACTCAGTCTGATGCTAACAATGGTGGGGGGTTCTCTGTTCCAAGGTACTGCGCAGAAACGATATTTCCTCGGCTCGATTACTCGGCTGAGCCACCGGTTCAGACGGTGGTTGCAAAGGATGTTCATGGTGAGCTTTGGAAGTTCAGGCACATATATAGGGGTACACCGAGGAGGCACTTGCTTACAACTGGTTGGAGCACTTTTGTGAACCAGAAGAAGCTTGTTGCTGGTGATTCTGTGGTGTTTCTTAGGGCTGAGAATGGTGAACTTTGTGTTGGGATTAGGAGGGCAAAAAGGGGAATTGGTCTTGGTGGTGTTGGTGGTGGGTGTGAGGGTTCATCTGTGTGGAGCTCAGCTTCTTCTGGTAATGGTGGGAATTGTGGTGGTGGTGTTGGAGGGCATTTTGGGGCATTCTCTTTTTTCTTGAGAGAGGAGAATAACAAGTTTCTGAGGAGTGGTTTTGTTGGTGTTGGTGGTTCAAAGGTGAGGCATGAGGATGTTGTGGAGGCTGTGACATTTGCTTCAAGGAGCATGCCATTTGAGGTTGTTTATTACCCAAGGGCAAGCACTCCTGAGTTCTGCATTAAGGCTTCTTCTGTTAGGGATGCTATGAGGATTCAATGGTGTTCTGGGATGAGGTTCAAGATGCCCTTTGAGACTGAGGACTCTTCCAGGATCAGCTGGTTCATGGGCACTGTTGCTTCTGTTCAGGTTCTTGATCCTATAAGATGGCCTAATAGCCCTTGGAGAATTCTTCAGGTTTCTTGGGATGAGCCGGATTTGCTTCAGAATGTGAAGCGTGTTAGCCCATGGTTGGTTGAATTGGTGTCAAACATGCCAGTCATCAATCTCGCACCGTTCTCTCCGCCGAGGAAGAAGCTGCGGTATCCGCCCCACCCCGATTTCCCCCTTGATGTTCAGTTTCAGTTACCGACGTTTTCGGGCAACCAGTATGGGCCCAACAGCCCCATGTGTTGTTTATCCGACAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATCGGAATATCTCTTTCAGATTTCCACCTTAACAATAAACTGCAGTTGGGGCTGCTTCCAACTAGTATCAACAAGCTCGATGTTCATAGCAGGATTTCGAATGGCACCGTGACCAACCATGATAAGAGCAAAGAGAGCTTATCATGCTTGCTGACCATGGGAAAATCTAGCAAGAGTTTGGAGAAATCTGATAATGTTAAGGGACACCAGTTTTTGCTTTTCGGTCAACCGATTCTCACCGAACAACAAATCTCTACTAGCTGTGCTACAGATTTGTTATCTCCTAATTCGCGTAAAAGAAAAGACTCACCGGATGAGGATAAGGACACAGAAAAGTGCTTTCTGAGTGATTCTCAATCTGCATTTTCGCAGCACTTCTCACCAGGAAAAGCTTCTAGTGCCGAGTTTTCTTGGCAACTCGGCCTGGACACCGGTCATTGCAAAGTCTTCTTGGAGTCAGAAGACGTAGGAAGGACCTTAGACCTTTCAAGCCTCGGTTCGTATGAAGAGCTGTACAGAAGGCTCGCCAATATGTTTGGCATGGAAAGATCCGAGATGTCGAACCACGTGCTTTATCGCGATGCAACCGGTACCATTAAGAAAACCGGAGAAGAACCCTTCAGTGAATTCATGAAAACAGCAAAAAGGTTGACCATTCTGACTGATTCAAGCAGCAAAAACATTAGAAGGGCCTGGATTATAGGAACTATGAGTGGAGAACATGGCATTGATGCATCAAATAAAACTGGTCCTCTAAGCATATTTGCTTAG 2145 0.4713 MKEGEKSLDPQLWHACAGGMVQIPQVNTKVFYFPQGHAEHAQTSIDLSASSMRVPPLIPSRVASVKFMADPETDEVFAKIKLIPLKSSELDEGNDTVLDGEAIENKEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVVAKDVHGELWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSVVFLRAENGELCVGIRRAKRGIGLGGVGGGCEGSSVWSSASSGNGGNCGGGVGGHFGAFSFFLREENNKFLRSGFVGVGGSKVRHEDVVEAVTFASRSMPFEVVYYPRASTPEFCIKASSVRDAMRIQWCSGMRFKMPFETEDSSRISWFMGTVASVQVLDPIRWPNSPWRILQVSWDEPDLLQNVKRVSPWLVELVSNMPVINLAPFSPPRKKLRYPPHPDFPLDVQFQLPTFSGNQYGPNSPMCCLSDNAPAGIQGARHAQIGISLSDFHLNNKLQLGLLPTSINKLDVHSRISNGTVTNHDKSKESLSCLLTMGKSSKSLEKSDNVKGHQFLLFGQPILTEQQISTSCATDLLSPNSRKRKDSPDEDKDTEKCFLSDSQSAFSQHFSPGKASSAEFSWQLGLDTGHCKVFLESEDVGRTLDLSSLGSYEELYRRLANMFGMERSEMSNHVLYRDATGTIKKTGEEPFSEFMKTAKRLTILTDSSSKNIRRAWIIGTMSGEHGIDASNKTGPLSIFA* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g3000 714 ProSiteProfiles PB1 domain profile. 602 682 IPR000270 GO:0005515
Aev04g3000 714 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
Aev04g3000 714 Gene3D - 110 214 IPR015300 -
Aev04g3000 714 MobiDBLite consensus disorder prediction 548 569 - -
Aev04g3000 714 Gene3D - 601 687 - -
Aev04g3000 714 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677
Aev04g3000 714 CDD B3_DNA 111 212 IPR003340 GO:0003677
Aev04g3000 714 MobiDBLite consensus disorder prediction 553 569 - -
Aev04g3000 714 Pfam Auxin response factor 286 369 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Aev04g3000 714 PANTHER AUXIN RESPONSE FACTOR 2 691 - -
Aev04g3000 714 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 691 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aev04g3000 714 Gene3D - 323 396 - -
Aev04g3000 714 SMART B3_2 112 214 IPR003340 GO:0003677
Aev04g3000 714 SUPERFAMILY DNA-binding pseudobarrel domain 103 215 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g3000 Aev-Chr4 29798323 29801519 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g3000 1 686 B3 DNA Binding Superfamily AT4G30080 56.205 0.0 724
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Aev04g3000 B3 5.8e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g3000 - - gmx:100814686 1061.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev04g3000 04 29798323 29801519 Aev04g3000 04 29798323 29801519 ECH
Aev10g1916 10 20616539 20619154 Aev04g3000 04 29798323 29801519 ECH
Aev02g2304 02 23916605 23919136 Aev04g3000 04 29798323 29801519 ECH
Aev10g1916 10 20616539 20619154 Aev04g3000 04 29798323 29801519 PCT