LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev04g2983	ATGGAGGTTGACAATGGCAGAAGAAGTGAGTATGACTTCAGCAATTACTATACTGAAAATGATGGGAGTGAGGAGCATAGTAGTGATGGATCAGCTGCAGAAAGTTCTGGTGAGTCCATATCAAGACGAAGTGATTGTAACGGCAGAGGTTGTGATATTGGTAGTGATAGTTGTAGTGATAGTGGTAGTGATAGTTGTAGTCATAGTGAGGGGAAGTTGAAGTCAAACAATGTTGTTAGGACGGACGATTTGTTGGCAGCCCCGAGTGGTTCCGATCTAATAGAAAAAGAGTTTGCAAACCTGGATGAGGCTTACAGTTACTATGTTACATATGCTCGGTTTGCAGGATTTGGTGTTAGAAAGGGCGATGTAGGGCGTGATAAGAGGGGAGTCATAACGAGAAGAATTTTTTTTTGTTGCAAGCAGGGGTTACGAGAGAAAAAACACTATGAGCGAGATGGTCGTAAGCGGGAAGCAAAGGCAGAGACACGTACAGATTGTAAAGCTCGGTTGGTAGTTTCGTTGCAGAAAGGGGAGTCGGTGTGGAAAGTGACCAAGTTCGTGGAAGATCACAACCACGAGTTAATGCCACAAAATTTTGTTCATCTAATTCGTAATTATAGACACATATCTAAAGGCCACAAGGCACAAATTGCATTGATGCATCGGCATGGGATGAAAACGTCTCAAATAATGGGTTTTCTTGCCGGACAAAGTGGAGGATATGGTCGGATTGGGTTTTGCAAAAAGGACTTGGCGAATTTCATTGAGAGTGATAGGATTAGGAAAATTTTACATGGTGATGCTGATGCAGCATTAAGTTACTTGGAAGGAGGAGCAGATGTGGGTGGCATGACCGTTGCAAGGTGCGGGGTGAGTGAAAATGCGTGGGTACGTGGATTGTTTGAAAAAAAGGAAATGTGGGCTGCTGCATATTTGCGTGACAAGTTTTGTGCTGGGGTAAAGACCACCTCCCGTTGTGAGGGGTTAAATGGTCAAGTTAAAAGATTTGTTCGGTCACGGTGTAGCATACTTGAACTTGTACAAAATCTTGAAAGAGCTCTAAAAGATCTCCGCAACAATGAACTAGAAGCTCAATTTCAGTCAATTTATACCCACCCGGTGTACGACACTGGACTCCATTCTATTGAGGTTGCTGCTGCGAAGGTTTACACGAGGAAGATATTCAAGGAGGTTAAGCAACAAATTTTGGCAATCTCTTCTGTGATCATGGTAAGCCGTGACAGAATTTGTACGACAGTTAAGTACCAATTGTGTAAATTCGGTGAACCCAATAGGTTGTTCGATGTTTTTTGTGACAAGGTTGGTGATGAGAAAGGACCGATGATTTCATGTGATTGTTGCTTCTGGAGGATGGAAGGGATTCCTTGCAGCCACATTTTTTATGTGATGAAAGAAGAGCACATACCGGAGTTGCCATCTAGCTTAGTCTTGAGAAGGTGGCGGAAAGATGCTAAGACCTTTCATGATGATGAAGAGAGTGATGAGGATTCTATGAAGCGTCAATTGTTGAGGTATGGTGCATTAGCTTCAGCGAGTTTATGGATGTCTTTCTTGGCATCAAAGAGTGGACCGTACTTCAAGAAAGCTATGAATATGGTCATTGGTGTGACGAATGATCTTGAAGTAAGACATGCTGAGGATGGAGGTGGTTTGAAACGGGTTCGCGATCCGACTATTTCAAAGACAAAGGGTGCTCCGAAACTTAGCAAACGTGATAGGAGAAAGAGGTTGTGCTCAAATTGTTCCAAGGTTGGGCACACAAAGAGGACCTGCCCAAACATACATAATTATGGTGTCGGAAGTGATGATGACTACATGGAAGACCTACATAGCAATGAAGACAGTTGCCACAGACAGAGTGCAGCACATGAGGCTGGTTCATCTAGAAGAAGGATGACATCACAATCTGATATGCATTCAACAGATGGTGTACAATGCCAAATGGGTTCAGCTCCTTTTGTGCCGAATACATATGGAAATATGTTCTTTGGGGGGCAATACATAAACCAAATATTTCCACCAGGCCGCACTGAAGGTGACGCTATGTTGCATTCCCGGCCGTCTGAAACTGCATCTGTTCATAATATGGCTCCACCAAAGTTTGCACCACAAGGTTCAGTAGATCCTGGACACCAATATATATTGCAGCAATTTATGCAGAGAGGCAACAACAACAACATACCGTAA	2211	0.4328	MEVDNGRRSEYDFSNYYTENDGSEEHSSDGSAAESSGESISRRSDCNGRGCDIGSDSCSDSGSDSCSHSEGKLKSNNVVRTDDLLAAPSGSDLIEKEFANLDEAYSYYVTYARFAGFGVRKGDVGRDKRGVITRRIFFCCKQGLREKKHYERDGRKREAKAETRTDCKARLVVSLQKGESVWKVTKFVEDHNHELMPQNFVHLIRNYRHISKGHKAQIALMHRHGMKTSQIMGFLAGQSGGYGRIGFCKKDLANFIESDRIRKILHGDADAALSYLEGGADVGGMTVARCGVSENAWVRGLFEKKEMWAAAYLRDKFCAGVKTTSRCEGLNGQVKRFVRSRCSILELVQNLERALKDLRNNELEAQFQSIYTHPVYDTGLHSIEVAAAKVYTRKIFKEVKQQILAISSVIMVSRDRICTTVKYQLCKFGEPNRLFDVFCDKVGDEKGPMISCDCCFWRMEGIPCSHIFYVMKEEHIPELPSSLVLRRWRKDAKTFHDDEESDEDSMKRQLLRYGALASASLWMSFLASKSGPYFKKAMNMVIGVTNDLEVRHAEDGGGLKRVRDPTISKTKGAPKLSKRDRRKRLCSNCSKVGHTKRTCPNIHNYGVGSDDDYMEDLHSNEDSCHRQSAAHEAGSSRRRMTSQSDMHSTDGVQCQMGSAPFVPNTYGNMFFGGQYINQIFPPGRTEGDAMLHSRPSETASVHNMAPPKFAPQGSVDPGHQYILQQFMQRGNNNNIP*	737

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev04g2983	736	PANTHER	PROTEIN FAR1-RELATED SEQUENCE 10-RELATED	94	277	IPR031052	GO:0006355
	Aev04g2983	736	MobiDBLite	consensus disorder prediction	29	43	-	-
	Aev04g2983	736	PANTHER	PROTEIN FAR1-RELATED SEQUENCE 10-RELATED	293	516	IPR031052	GO:0006355
	Aev04g2983	736	Coils	Coil	344	368	-	-
	Aev04g2983	736	SMART	26again6	450	477	IPR006564	GO:0008270
	Aev04g2983	736	PANTHER	OS03G0181600 PROTEIN	94	277	-	-
	Aev04g2983	736	PANTHER	OS03G0181600 PROTEIN	293	516	-	-
	Aev04g2983	736	Pfam	FAR1 DNA-binding domain	106	197	IPR004330	-
	Aev04g2983	736	MobiDBLite	consensus disorder prediction	634	651	-	-
	Aev04g2983	736	MobiDBLite	consensus disorder prediction	559	581	-	-
	Aev04g2983	736	MobiDBLite	consensus disorder prediction	616	651	-	-
	Aev04g2983	736	ProSiteProfiles	Zinc finger CCHC-type profile.	586	601	IPR001878	GO:0003676\|GO:0008270
	Aev04g2983	736	MobiDBLite	consensus disorder prediction	1	49	-	-
	Aev04g2983	736	SUPERFAMILY	Retrovirus zinc finger-like domains	577	605	IPR036875	GO:0003676\|GO:0008270
	Aev04g2983	736	MobiDBLite	consensus disorder prediction	616	633	-	-
	Aev04g2983	736	ProSiteProfiles	Zinc finger SWIM-type profile.	435	475	IPR007527	GO:0008270

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev04g2983	Aev-Chr4	29606818	29612039	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Aev04g2983		FAR1	4.3e-21	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev04g2983	-		-	aip:107636930	295.049