Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g2958 ATGGTGTCGGACGCTAGCAAGAAGAAGGCCGCGCAGAAGAAGGCCGCCGCCGCTGCAAAGAGAGGTGGAAAGGCCGCAGTTGCCGCAGCGTCCGCGAAAATTGCGGCGATCGATGCTAAGGCAGCTGATAAGGTCGCTAACGGGATCGCCGACATTCAAATATCGGATCGGACCTGTACCGGCGTTCTCTGCTCCCATCCTCTTTCCAGGGATATTCGAATAGAGTCTCTATCAGTTACTTTCCATGGTCATGATCTCATAGTTGATTCTGAATTGGAGTTAAATTATGGAAGACGTTATGGTTTGCTTGGATTAAATGGTTGTGGAAAGTCCACTTTGCTTGCGGCAATAGGTTGCCGGGAACTTCCAATTCCAGACCACATGGATATTTATCACCTTACGAGGGAAATTGAAGCCACAGATATGTCAGCATTGGAGGCTGTCATAAGCTGTGATGAGGAAAGGTTGAGATTGGAAAAAGAAGCTGAAGCTTTGGCTGCACAGGATGATGGAGGTGGTGAATCCCTTGAACGTATTTATGAACGATTGGAGGCCCTAGATGCATCAACAGCGGAAAAGCGTGCTGCTGAAATTTTACATGGTCTTGGTTTCAACAAGAAAATGCAAGCACAGAAGACTCGTGATTTTTCTGGGGGCTGGAGAATGAGAATTGCATTAGCAAGAGCTCTGTTTATGAACCCAACCATCCTTCTTCTTGATGAGCCGACCAATCACCTTGATTTGGAAGCTTGTGTGTGGCTCGAGGACAGTTTGAAGAAGTTTGAGCGCATCCTGGTTGTGATTTCACACTCTCAGGACTTCCTTAATGGTGTCTGCACAAATATTATCCACATGCAAAGCAAAAAACTGAAGCTCTACACTGGTAACTTTGATCAGTATGTTCAGACTCGTTCCGAGTTGGAGGAGAACCAGATGAAACAGTACAAGTGGGAGCAGGAGCAGATTTCCTCAATGAAAGAATATATTGCCCGATTTGGCCACGGTTCAGCAAAACTAGCTCGCCAGGCACAGAGTAAAGAGAAAACACTGGCAAAAATGGAACGGGGTGGACTCACAGAGAAAGTGGCCAGGGACAAAGTTTTGGTATTCCGCTTTACTGATGTGGGGAAACTTCCCCCTCCTGTTCTCCAGTTCGTCGAGGTTTCCTTCGGCTACACTCCTGATAATCTTATCTACAAGAACATCGATTTCGGAGTTGATTGTGACACTAGGATAGCACTGGTTGGACCCAATGGGGCCGGGAAGAGTACCTTTCTGAAGCTAATGACAGGTGATCTGATTCCCACCGACGGCATGGTCCGGCGTCACAATCACCTCCGAATCGCTCAATATCACCAGCACTTGGCTGAAAAGCTAGACCTGGAAATGTCTGCTCTCCAGTTTATGATAAAAGAATACCCTGGAAATGAGGAAGAGAAGATGAGGGCTGCCATTGGTAAGTTTGGCCTGTCAGGTAAAGCCCAGATCATGCCAATGCAGAATCTGTCTGATGGGCAGAGGAGCCGTGTGATATTCGCATGGCTGGCGTGGAGGCAGCCTCATTTGCTGCTCCTGGATGAGCCAACCAATCATCTTGACATCGAGACGATCGATTCCTTGGCCGAGGCATTGAACGAATGGGACGGCGGCATGGTGCTTGTTAGCCATGATTTCAGGCTCATAAATCAGGTGGCCCATGAGATATGGGTGTGTGCTGACCAAACTGTGACCAGATGGGAAGGTGACATTATGGAATTCAAGGAGCATCTTAGGTCAAAAGCGGGTATATCTGAATGA 1797 0.478 MVSDASKKKAAQKKAAAAAKRGGKAAVAAASAKIAAIDAKAADKVANGIADIQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLAAIGCRELPIPDHMDIYHLTREIEATDMSALEAVISCDEERLRLEKEAEALAAQDDGGGESLERIYERLEALDASTAEKRAAEILHGLGFNKKMQAQKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEDSLKKFERILVVISHSQDFLNGVCTNIIHMQSKKLKLYTGNFDQYVQTRSELEENQMKQYKWEQEQISSMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVARDKVLVFRFTDVGKLPPPVLQFVEVSFGYTPDNLIYKNIDFGVDCDTRIALVGPNGAGKSTFLKLMTGDLIPTDGMVRRHNHLRIAQYHQHLAEKLDLEMSALQFMIKEYPGNEEEKMRAAIGKFGLSGKAQIMPMQNLSDGQRSRVIFAWLAWRQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQTVTRWEGDIMEFKEHLRSKAGISE* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g2958 598 Pfam ABC transporter 90 244 IPR003439 GO:0005524
Aev04g2958 598 Pfam ABC transporter 283 361 IPR032781 -
Aev04g2958 598 Gene3D - 72 336 IPR027417 -
Aev04g2958 598 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 366 577 IPR027417 -
Aev04g2958 598 PANTHER - 1 597 - -
Aev04g2958 598 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 72 312 IPR003439 GO:0005524
Aev04g2958 598 CDD ABCF_EF-3 72 289 - -
Aev04g2958 598 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 597 - -
Aev04g2958 598 ProSitePatterns ABC transporters family signature. 216 230 IPR017871 GO:0005524
Aev04g2958 598 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 383 598 IPR003439 GO:0005524
Aev04g2958 598 Gene3D - 346 596 IPR027417 -
Aev04g2958 598 CDD ABCF_EF-3 383 575 - -
Aev04g2958 598 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 318 IPR027417 -
Aev04g2958 598 Pfam ABC transporter 399 530 IPR003439 GO:0005524
Aev04g2958 598 SMART AAA_5 408 575 IPR003593 -
Aev04g2958 598 SMART AAA_5 96 298 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g2958 Aev-Chr4 29354035 29357701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g2958 383 576 Calmodulin-binding Proteins AT2G36910 25.446 2.36e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g2958 K06185 - gmx:100809491 1043.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev04g2958 04 29354035 29357701 Aev04g2958 04 29354035 29357701 ECH
Aev10g1942 10 20805575 20808641 Aev04g2958 04 29354035 29357701 PCT