Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aev04g2938 | ATGCTCGCATTCCGGCCATGCCTCTTTCCACCACTCTTCAGCCCCATTTCCCTTAAACTCCCCTTCCCCTCTCTCTCCTCTTCCTCTTCCTCTTCCATTCTTCTTCCTCTCCCTCTCCATTTCCGTTCCAAAATGTCCAAACCACCCTCCGCCTTCGACAAACTCATGTCCGGCGCCCGCGCCGCCGCCGCCAACGCCAAGAAGAAATCCCAACCGTCGCAACCTCCGTCATCTTCTCCCAAGAAACGAAAATCCCCTACTCCAACTACTACACCCACTCCTACCTCTACCCTAAACCCTAATGACAACCTCAAACCCTCCGAAACCCCACAACCGCCGCCTCCTACGGTGGACTCAGCGAAGCCCGAATCGGGGAACGGAGGTGCTCCGCCGAGCAAGGTTCGCAACGTGGCTTCGCAGGAGAAGGTGGCGGAGCTGAAGAAGCGCGTTCCTGAGCTGAAGAAGAAGCCCGCGGAGTTCAAACCTGGCAACATGGCTACCTGGGAGAAGGGCGAGCCGGTGCCGTTTCTTTTCCTGTGCTTGGCGTTCGATATGATTGCGGAGGAGACAGGGAGGATCGTGATTACGGATATAGTGTGCAATATGTTGAGGACTGTGATTTACGCTACCCCTGAGGATCTCGTGCCGGTTGTTTATCTCTCTGCGAATAGGATTGCTCCGGCACATGAAGGGTTGGAGTTGGGGATTGGCGACGCTTCCATTATTAAGGCACTTGCCGAGGCATGTGGAAGGACTGAATCACAAATCAAGAATCAATATAAGGAAAAAGGTGACTTGGGCTTAGTTGCCAAAGCGAGCCGGTCATCCCAGTCTATGATGCGGAAGCCTGATGCCTTAACTATCAGGAAGGTTTTCAACACTTTCCGACTTATTGCCAAGGAATCTGGAAAAGACAGTCAAGAGAAGAAAAAGAATCATATAAAGGCACTTCTTGTTGCTGCGACTGACTGTGAACCTCAATATCTTATCCGATTGCTTCAGACAAAGTTACGCATTGGGTATGCTGAGCAAACTCTCTTAGCTGCATTAGGCCAAGCTGCAGTATACACTGAAGAACATTCTAAACCACCTCCTGCAATTCAGTCTCCTTTAGAAGAGGCTGCAAAGATTGTTAAACAAGTATATTCTGTTCTCCCTGACTATGACAAAATAGTATCTGCACTGCTAGCGGATGGTGTATGGAAACTTCCGAAAGCCTGTAATTTTACTCCTGGTGTTCCAGTTGGACCTATGCTTTCAAAAGCAACCAAGGGTGTCTCTGAAGTTCTCAATAAATTCCAGGATGTGGAGTTTACCTGTGAATACAAATATGATGGAGAGCGTGCCCAGATACATTACATGGAGAATGGTTCAGTTGAGATTTATAGTAGAAATGCAGAGCGGAACACTGGGAAGTTCCCTGATGTTGTTGCTGCAATTTCAAGGTTAAAGAAATCAAATGTATCATCATTTGTTCTTGACTGCGAACTTGTTGCATATGATCGTGGAAAACAGAAAATCCTTCCTTTCCAGGTTCTTAGTACCCGGGCTCGCAAAAATGTATCTATGAGTGATATAAAGGTTGATGTTTGCATATTTGCTTTTGATCTGTTGTATCTTAATGGCCAAGCACTTCTTCAGGAAAACCTGAGAGTTCGTAGAGAGAATCTCTATGCCTCTTTTGAGGAAGAATCTGGGTTTTTTCAGTTTGCAACAGCAATAACATCAACTGATGTTGAGGAAATACAGAAGTTTCTTGACAAATCTGTTGATGCAAGTTGTGAGGGGTTAATTATTAAAACATTACATGAAGATGCTACATATGAACCTTCCAAGCGCTCACTCAACTGGCTAAAATTGAAGAAAGATTATCTGGAAAATATAGGGGACTCACTTGATTTGGTACCTATAGCTGCTTTCCATGGTCGTGGGAAACGTACAGGAGTCTATGGTGCCTTTCTCCTGGCTTGCTATGACTACAATAATGAAGAATTCCAAAGTATTTGTAAGATAGGTACGGGATTCTCCGAAGAAATGCTTGAAGAACGCTCTGCTAGTCTCCGTTCTAAAGTGATTTCAAAGCCAAAGCCATACTATCGGTATGCAGATACAATTAATCCTGATGTCTGGTTTGAAGCCAGTGAGGTGTGGGAGGTTAAAGCTGCAGATCTGACCATTAGCCCAGTTCACCGTGCTGCAGTGGGCATAGTAGATTCGGACAAGGGCATATCTCTTAGATTTCCTCGTCTACTTCGAGTTCGGCCTGACAAAGCACCTGAACAAGCCTCAACATCTGATATGGTTGCTGATATGTATAACGCCCAAAAACACAACCACACAAACAACCAAGATGACGATGAAGATTGA | 2367 | 0.458 | MLAFRPCLFPPLFSPISLKLPFPSLSSSSSSSILLPLPLHFRSKMSKPPSAFDKLMSGARAAAANAKKKSQPSQPPSSSPKKRKSPTPTTTPTPTSTLNPNDNLKPSETPQPPPPTVDSAKPESGNGGAPPSKVRNVASQEKVAELKKRVPELKKKPAEFKPGNMATWEKGEPVPFLFLCLAFDMIAEETGRIVITDIVCNMLRTVIYATPEDLVPVVYLSANRIAPAHEGLELGIGDASIIKALAEACGRTESQIKNQYKEKGDLGLVAKASRSSQSMMRKPDALTIRKVFNTFRLIAKESGKDSQEKKKNHIKALLVAATDCEPQYLIRLLQTKLRIGYAEQTLLAALGQAAVYTEEHSKPPPAIQSPLEEAAKIVKQVYSVLPDYDKIVSALLADGVWKLPKACNFTPGVPVGPMLSKATKGVSEVLNKFQDVEFTCEYKYDGERAQIHYMENGSVEIYSRNAERNTGKFPDVVAAISRLKKSNVSSFVLDCELVAYDRGKQKILPFQVLSTRARKNVSMSDIKVDVCIFAFDLLYLNGQALLQENLRVRRENLYASFEEESGFFQFATAITSTDVEEIQKFLDKSVDASCEGLIIKTLHEDATYEPSKRSLNWLKLKKDYLENIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDYNNEEFQSICKIGTGFSEEMLEERSASLRSKVISKPKPYYRYADTINPDVWFEASEVWEVKAADLTISPVHRAAVGIVDSDKGISLRFPRLLRVRPDKAPEQASTSDMVADMYNAQKHNHTNNQDDDED* | 789 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aev04g2938 | 788 | Gene3D | - | 626 | 788 | IPR012340 | - | |
Aev04g2938 | 788 | ProSitePatterns | ATP-dependent DNA ligase signature 2. | 595 | 621 | IPR016059 | GO:0003909 | |
Aev04g2938 | 788 | Gene3D | - | 152 | 419 | IPR036599 | GO:0003677|GO:0003910|GO:0006281|GO:0006310 | |
Aev04g2938 | 788 | Pfam | ATP dependent DNA ligase C terminal region | 646 | 757 | IPR012309 | GO:0003910|GO:0006281|GO:0006310 | |
Aev04g2938 | 788 | Gene3D | - | 427 | 625 | - | - | |
Aev04g2938 | 788 | SUPERFAMILY | Nucleic acid-binding proteins | 629 | 775 | IPR012340 | - | |
Aev04g2938 | 788 | Pfam | ATP dependent DNA ligase domain | 417 | 621 | IPR012310 | GO:0003910|GO:0005524|GO:0006281|GO:0006310 | |
Aev04g2938 | 788 | ProSiteProfiles | ATP-dependent DNA ligase family profile. | 523 | 659 | IPR012310 | GO:0003910|GO:0005524|GO:0006281|GO:0006310 | |
Aev04g2938 | 788 | TIGRFAM | dnl1: DNA ligase I, ATP-dependent (dnl1) | 233 | 772 | IPR000977 | GO:0003910|GO:0005524|GO:0071897 | |
Aev04g2938 | 788 | MobiDBLite | consensus disorder prediction | 67 | 105 | - | - | |
Aev04g2938 | 788 | PANTHER | DNA LIGASE 1 | 65 | 787 | - | - | |
Aev04g2938 | 788 | ProSitePatterns | ATP-dependent DNA ligase AMP-binding site. | 441 | 449 | IPR016059 | GO:0003909 | |
Aev04g2938 | 788 | SUPERFAMILY | DNA ligase/mRNA capping enzyme, catalytic domain | 409 | 627 | - | - | |
Aev04g2938 | 788 | MobiDBLite | consensus disorder prediction | 756 | 788 | - | - | |
Aev04g2938 | 788 | CDD | OBF_DNA_ligase_I | 629 | 774 | - | - | |
Aev04g2938 | 788 | MobiDBLite | consensus disorder prediction | 50 | 142 | - | - | |
Aev04g2938 | 788 | Gene3D | DNA ligase/mRNA capping enzyme | 446 | 571 | - | - | |
Aev04g2938 | 788 | CDD | Adenylation_DNA_ligase_I_Euk | 406 | 624 | - | - | |
Aev04g2938 | 788 | PANTHER | DNA LIGASE 1/3 FAMILY MEMBER | 65 | 787 | - | - | |
Aev04g2938 | 788 | Coils | Coil | 136 | 156 | - | - | |
Aev04g2938 | 788 | Pfam | DNA ligase N terminus | 175 | 350 | IPR012308 | GO:0003677|GO:0003910|GO:0006281|GO:0006310 | |
Aev04g2938 | 788 | SUPERFAMILY | ATP-dependent DNA ligase DNA-binding domain | 159 | 407 | IPR036599 | GO:0003677|GO:0003910|GO:0006281|GO:0006310 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aev04g2938 | Aev-Chr4 | 29148374 | 29154613 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aev04g2938 | 42 | 786 | Core DNA Replication Machinery Family | AT1G08130 | 69.108 | 0.0 | 1057 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aev04g2938 | K10747 | - | gmx:100783155 | 1154.43 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Aev04g2938 | 04 | 29148374 | 29154613 | Aev04g2938 | 04 | 29148374 | 29154613 | ECH |