Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g2938 ATGCTCGCATTCCGGCCATGCCTCTTTCCACCACTCTTCAGCCCCATTTCCCTTAAACTCCCCTTCCCCTCTCTCTCCTCTTCCTCTTCCTCTTCCATTCTTCTTCCTCTCCCTCTCCATTTCCGTTCCAAAATGTCCAAACCACCCTCCGCCTTCGACAAACTCATGTCCGGCGCCCGCGCCGCCGCCGCCAACGCCAAGAAGAAATCCCAACCGTCGCAACCTCCGTCATCTTCTCCCAAGAAACGAAAATCCCCTACTCCAACTACTACACCCACTCCTACCTCTACCCTAAACCCTAATGACAACCTCAAACCCTCCGAAACCCCACAACCGCCGCCTCCTACGGTGGACTCAGCGAAGCCCGAATCGGGGAACGGAGGTGCTCCGCCGAGCAAGGTTCGCAACGTGGCTTCGCAGGAGAAGGTGGCGGAGCTGAAGAAGCGCGTTCCTGAGCTGAAGAAGAAGCCCGCGGAGTTCAAACCTGGCAACATGGCTACCTGGGAGAAGGGCGAGCCGGTGCCGTTTCTTTTCCTGTGCTTGGCGTTCGATATGATTGCGGAGGAGACAGGGAGGATCGTGATTACGGATATAGTGTGCAATATGTTGAGGACTGTGATTTACGCTACCCCTGAGGATCTCGTGCCGGTTGTTTATCTCTCTGCGAATAGGATTGCTCCGGCACATGAAGGGTTGGAGTTGGGGATTGGCGACGCTTCCATTATTAAGGCACTTGCCGAGGCATGTGGAAGGACTGAATCACAAATCAAGAATCAATATAAGGAAAAAGGTGACTTGGGCTTAGTTGCCAAAGCGAGCCGGTCATCCCAGTCTATGATGCGGAAGCCTGATGCCTTAACTATCAGGAAGGTTTTCAACACTTTCCGACTTATTGCCAAGGAATCTGGAAAAGACAGTCAAGAGAAGAAAAAGAATCATATAAAGGCACTTCTTGTTGCTGCGACTGACTGTGAACCTCAATATCTTATCCGATTGCTTCAGACAAAGTTACGCATTGGGTATGCTGAGCAAACTCTCTTAGCTGCATTAGGCCAAGCTGCAGTATACACTGAAGAACATTCTAAACCACCTCCTGCAATTCAGTCTCCTTTAGAAGAGGCTGCAAAGATTGTTAAACAAGTATATTCTGTTCTCCCTGACTATGACAAAATAGTATCTGCACTGCTAGCGGATGGTGTATGGAAACTTCCGAAAGCCTGTAATTTTACTCCTGGTGTTCCAGTTGGACCTATGCTTTCAAAAGCAACCAAGGGTGTCTCTGAAGTTCTCAATAAATTCCAGGATGTGGAGTTTACCTGTGAATACAAATATGATGGAGAGCGTGCCCAGATACATTACATGGAGAATGGTTCAGTTGAGATTTATAGTAGAAATGCAGAGCGGAACACTGGGAAGTTCCCTGATGTTGTTGCTGCAATTTCAAGGTTAAAGAAATCAAATGTATCATCATTTGTTCTTGACTGCGAACTTGTTGCATATGATCGTGGAAAACAGAAAATCCTTCCTTTCCAGGTTCTTAGTACCCGGGCTCGCAAAAATGTATCTATGAGTGATATAAAGGTTGATGTTTGCATATTTGCTTTTGATCTGTTGTATCTTAATGGCCAAGCACTTCTTCAGGAAAACCTGAGAGTTCGTAGAGAGAATCTCTATGCCTCTTTTGAGGAAGAATCTGGGTTTTTTCAGTTTGCAACAGCAATAACATCAACTGATGTTGAGGAAATACAGAAGTTTCTTGACAAATCTGTTGATGCAAGTTGTGAGGGGTTAATTATTAAAACATTACATGAAGATGCTACATATGAACCTTCCAAGCGCTCACTCAACTGGCTAAAATTGAAGAAAGATTATCTGGAAAATATAGGGGACTCACTTGATTTGGTACCTATAGCTGCTTTCCATGGTCGTGGGAAACGTACAGGAGTCTATGGTGCCTTTCTCCTGGCTTGCTATGACTACAATAATGAAGAATTCCAAAGTATTTGTAAGATAGGTACGGGATTCTCCGAAGAAATGCTTGAAGAACGCTCTGCTAGTCTCCGTTCTAAAGTGATTTCAAAGCCAAAGCCATACTATCGGTATGCAGATACAATTAATCCTGATGTCTGGTTTGAAGCCAGTGAGGTGTGGGAGGTTAAAGCTGCAGATCTGACCATTAGCCCAGTTCACCGTGCTGCAGTGGGCATAGTAGATTCGGACAAGGGCATATCTCTTAGATTTCCTCGTCTACTTCGAGTTCGGCCTGACAAAGCACCTGAACAAGCCTCAACATCTGATATGGTTGCTGATATGTATAACGCCCAAAAACACAACCACACAAACAACCAAGATGACGATGAAGATTGA 2367 0.458 MLAFRPCLFPPLFSPISLKLPFPSLSSSSSSSILLPLPLHFRSKMSKPPSAFDKLMSGARAAAANAKKKSQPSQPPSSSPKKRKSPTPTTTPTPTSTLNPNDNLKPSETPQPPPPTVDSAKPESGNGGAPPSKVRNVASQEKVAELKKRVPELKKKPAEFKPGNMATWEKGEPVPFLFLCLAFDMIAEETGRIVITDIVCNMLRTVIYATPEDLVPVVYLSANRIAPAHEGLELGIGDASIIKALAEACGRTESQIKNQYKEKGDLGLVAKASRSSQSMMRKPDALTIRKVFNTFRLIAKESGKDSQEKKKNHIKALLVAATDCEPQYLIRLLQTKLRIGYAEQTLLAALGQAAVYTEEHSKPPPAIQSPLEEAAKIVKQVYSVLPDYDKIVSALLADGVWKLPKACNFTPGVPVGPMLSKATKGVSEVLNKFQDVEFTCEYKYDGERAQIHYMENGSVEIYSRNAERNTGKFPDVVAAISRLKKSNVSSFVLDCELVAYDRGKQKILPFQVLSTRARKNVSMSDIKVDVCIFAFDLLYLNGQALLQENLRVRRENLYASFEEESGFFQFATAITSTDVEEIQKFLDKSVDASCEGLIIKTLHEDATYEPSKRSLNWLKLKKDYLENIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDYNNEEFQSICKIGTGFSEEMLEERSASLRSKVISKPKPYYRYADTINPDVWFEASEVWEVKAADLTISPVHRAAVGIVDSDKGISLRFPRLLRVRPDKAPEQASTSDMVADMYNAQKHNHTNNQDDDED* 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g2938 788 Gene3D - 626 788 IPR012340 -
Aev04g2938 788 ProSitePatterns ATP-dependent DNA ligase signature 2. 595 621 IPR016059 GO:0003909
Aev04g2938 788 Gene3D - 152 419 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Aev04g2938 788 Pfam ATP dependent DNA ligase C terminal region 646 757 IPR012309 GO:0003910|GO:0006281|GO:0006310
Aev04g2938 788 Gene3D - 427 625 - -
Aev04g2938 788 SUPERFAMILY Nucleic acid-binding proteins 629 775 IPR012340 -
Aev04g2938 788 Pfam ATP dependent DNA ligase domain 417 621 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Aev04g2938 788 ProSiteProfiles ATP-dependent DNA ligase family profile. 523 659 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Aev04g2938 788 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 233 772 IPR000977 GO:0003910|GO:0005524|GO:0071897
Aev04g2938 788 MobiDBLite consensus disorder prediction 67 105 - -
Aev04g2938 788 PANTHER DNA LIGASE 1 65 787 - -
Aev04g2938 788 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 441 449 IPR016059 GO:0003909
Aev04g2938 788 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 409 627 - -
Aev04g2938 788 MobiDBLite consensus disorder prediction 756 788 - -
Aev04g2938 788 CDD OBF_DNA_ligase_I 629 774 - -
Aev04g2938 788 MobiDBLite consensus disorder prediction 50 142 - -
Aev04g2938 788 Gene3D DNA ligase/mRNA capping enzyme 446 571 - -
Aev04g2938 788 CDD Adenylation_DNA_ligase_I_Euk 406 624 - -
Aev04g2938 788 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 65 787 - -
Aev04g2938 788 Coils Coil 136 156 - -
Aev04g2938 788 Pfam DNA ligase N terminus 175 350 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Aev04g2938 788 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 159 407 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g2938 Aev-Chr4 29148374 29154613 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g2938 42 786 Core DNA Replication Machinery Family AT1G08130 69.108 0.0 1057
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g2938 K10747 - gmx:100783155 1154.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev04g2938 04 29148374 29154613 Aev04g2938 04 29148374 29154613 ECH