Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g2936 ATGTCTGACTCTTCTTCTGAATCCTGCTCAAAAAAAGTTTCTCTGATGGAACTTGAAAATGGGAATTTTGGCTGCAAGCATTACAGAAGGAGGTGCAAGATTAGGGCACCATGTTGTGATGAGGTTTTTGACTGTAGGCATTGCCATAACGAAGCTAAGAATTCTGAGGAGATTAATGTTCAAGATCGTCATGATATTCCACGCCATGAAATTAAGAAGGTCATCTGCACCTTATGTGATACAGAACAAGATGTTCAGCAATACTGCATAAGCTGTGGGATATGCATGGGCAAGTACTTTTGTGCTACTTGCAAATTCTTTGATGATGATATTTCGAAGAACCAATACCATTGCGATGAATGTGGCATCTGCAGAACTGGAGGCAAGGATAACTTTTTCCATTGTAAGAGATGTGGATGCTGCTACTCTAAGTTAATGGAAGCAGGGCATCGATGCGTGGAACGAGCGATGCATCACAATTGCCCTGTTTGTTTTGAGTATCTATTTGACACATTAAGAGACATTACTGTCTTGCCGTGTGGTCATACAATGCATTTAGAGTGTGTCAAAGAGATGGAAAAACACCATAGGTACTCATGTCCTGTTTGCTCAAAATCCATCTGTGACATGTCAAGTTTGTGGAAGAAGTTTGACCAAGTGATTGCTTCAACTCCAATGCCTGAAGCCTACAAAGACAAAATGGTTTGGATACTATGCAATGATTGTGGAGCAAACTCTCATGTTCAATTCCACATTGTGGCACATAAGTGCTTGAATTGCAACTCCTACAACACAAGGCAGATACAGGGGAACCCTACTACTTCATGTTCTTCTGGTGTGGCTGAGATGAATTCTTTTGATGATCTTGTTAAGATGGGAGAAAGGTTGCTGAAGATAGTGGTCTAG 906 0.4095 MSDSSSESCSKKVSLMELENGNFGCKHYRRRCKIRAPCCDEVFDCRHCHNEAKNSEEINVQDRHDIPRHEIKKVICTLCDTEQDVQQYCISCGICMGKYFCATCKFFDDDISKNQYHCDECGICRTGGKDNFFHCKRCGCCYSKLMEAGHRCVERAMHHNCPVCFEYLFDTLRDITVLPCGHTMHLECVKEMEKHHRYSCPVCSKSICDMSSLWKKFDQVIASTPMPEAYKDKMVWILCNDCGANSHVQFHIVAHKCLNCNSYNTRQIQGNPTTSCSSGVAEMNSFDDLVKMGERLLKIVV* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g2936 301 ProSiteProfiles Zinc finger RING-type profile. 161 204 IPR001841 -
Aev04g2936 301 Gene3D - 232 274 - -
Aev04g2936 301 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RZFP34 8 277 - -
Aev04g2936 301 SUPERFAMILY Zinc hairpin stack 97 154 IPR037275 -
Aev04g2936 301 Pfam Zinc finger, C3HC4 type (RING finger) 161 203 IPR018957 GO:0046872
Aev04g2936 301 ProSiteProfiles Zinc finger CTCHY-type profile. 96 160 IPR017921 -
Aev04g2936 301 SMART ring_2 161 203 IPR001841 -
Aev04g2936 301 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 8 277 - -
Aev04g2936 301 SUPERFAMILY RING/U-box 159 209 - -
Aev04g2936 301 SUPERFAMILY CHY zinc finger-like 19 95 IPR037274 GO:0008270
Aev04g2936 301 Pfam Zinc-ribbon 208 266 IPR039512 -
Aev04g2936 301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 216 IPR013083 -
Aev04g2936 301 Pfam CHY zinc finger 25 106 IPR008913 GO:0008270
Aev04g2936 301 ProSiteProfiles Zinc finger CHY-type profile. 18 94 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g2936 Aev-Chr4 29129351 29132032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g2936 14 270 C2H2 Transcription Factor Family AT3G18290 38.783 5.54e-56 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g2936 K10144 - gmx:100812709 530.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev04g2936 04 29129351 29132032 Aev04g2936 04 29129351 29132032 ECH