Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g2933 ATGGATCATAAGGAAGATTTGAGCATAACAGAGGAATTGGTGATGGGTTTGTCCAACAATAATAACGTTAATGATGCTACACACATCATTAAGGGAAAACGCACAAAGAGGATGAGGCTTTTGTCCACCAACACCACCACCGTGATGACGTCGACCTGCTCGAGTGCTTCTGGTGATGGTGGTGGTGATGATGATCAGGGGTCGTTGTCAATTTCGTCGACAACTACCACTGATCAGGAAGAGGAAGACATGGCTAATTGCCTTATTCTTCTGGCTCAAGGCGGCGGCGGCGATGGTGGTGGTGGAGATTCTGAACATGATGATCAACAACAACAAGATCAAAAGCAACAAGTTGATGAAGATCAAGATCACTACAAGATTGAGACGATCAAGGGTAGGAAACTATCTGAAATTGGTACCGCTTGTGGTGTTACTACCACCAATAAAGTTGGTTTCTATATTTATGAGTGCAAAACTTGCAACCGAACCTTCCCTTCCTTTCAAGCGTTGGGTGGGCACAGGGCAAGTCACAAAAGGCCCAAGATTATGACTGAGGAGAAGAAACCGCCACCACCAGCGCCACCAGCATCATCGATACCATCGTCATCGCCGCTGCGACGGCAAGTGATGGACATCAATTATGATCATCAACGATTTGAATTAGGAGGAGGTGGAGGGCAATTACAATCCCACATCATCAAAAGTGTCCCTCCAATTACTAATCCAATTTCTCTTCAATTTGGGAGTGCTCAAAAATCTAATAATTTCAATAGCAACAATAATATCAAGGCCAAGATTCATGAGTGCTCCATATGTGGCTCGGAATTCACATCGGGTCAAGCATTGGGTGGACACATGAGGAGGCACAGAGCGTCCGCAAACGTCGGTATTCATGCCATGAGTGGCATTGAGACAATTTCCAATGCCACTGTGGTCGCTGACGCGGCCACTGTGGCAATTGAAGTCCAACCTAGGACTATTTTGGAATTAGATCTTAACCTTCCGGCTCCGGAGGAAGACCTTCTCCGGGAGCCAACAAAGTTTCAATTCACTGCAGCAACTCAGAAATCTATGGTGCTTTCAGCTGCTCCGGCTTTGGTGGATTGCCATTATTAG 1116 0.4606 MDHKEDLSITEELVMGLSNNNNVNDATHIIKGKRTKRMRLLSTNTTTVMTSTCSSASGDGGGDDDQGSLSISSTTTTDQEEEDMANCLILLAQGGGGDGGGGDSEHDDQQQQDQKQQVDEDQDHYKIETIKGRKLSEIGTACGVTTTNKVGFYIYECKTCNRTFPSFQALGGHRASHKRPKIMTEEKKPPPPAPPASSIPSSSPLRRQVMDINYDHQRFELGGGGGQLQSHIIKSVPPITNPISLQFGSAQKSNNFNSNNNIKAKIHECSICGSEFTSGQALGGHMRRHRASANVGIHAMSGIETISNATVVADAATVAIEVQPRTILELDLNLPAPEEDLLREPTKFQFTAATQKSMVLSAAPALVDCHY* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g2933 371 SMART c2h2final6 267 289 IPR013087 -
Aev04g2933 371 SMART c2h2final6 155 177 IPR013087 -
Aev04g2933 371 MobiDBLite consensus disorder prediction 45 79 - -
Aev04g2933 371 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 20 371 - -
Aev04g2933 371 Pfam C2H2-type zinc finger 155 180 - -
Aev04g2933 371 Pfam C2H2-type zinc finger 267 291 - -
Aev04g2933 371 PANTHER ZINC FINGER PROTEIN ZAT5 20 371 - -
Aev04g2933 371 MobiDBLite consensus disorder prediction 91 124 - -
Aev04g2933 371 Gene3D Classic Zinc Finger 249 312 - -
Aev04g2933 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 267 294 IPR013087 -
Aev04g2933 371 MobiDBLite consensus disorder prediction 101 124 - -
Aev04g2933 371 ProSitePatterns Zinc finger C2H2 type domain signature. 157 177 IPR013087 -
Aev04g2933 371 ProSitePatterns Zinc finger C2H2 type domain signature. 269 289 IPR013087 -
Aev04g2933 371 MobiDBLite consensus disorder prediction 171 205 - -
Aev04g2933 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 155 182 IPR013087 -
Aev04g2933 371 SUPERFAMILY beta-beta-alpha zinc fingers 154 289 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g2933 Aev-Chr4 29092315 29093430 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g2933 24 371 C2H2 Transcription Factor Family AT2G28200 39.945 1.40e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aev04g2933 zf-C2H2_6 2.6e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g2933 - - aip:107629278 291.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev04g2933 04 29092315 29093430 Aev04g2933 04 29092315 29093430 ECH
Aev04g2933 04 29092315 29093430 Aev09g1850 09 22080825 22081895 ECH
Aev10g1955 10 20909311 20910318 Aev04g2933 04 29092315 29093430 ECH
Aev06g0301 06 2258507 2259412 Aev04g2933 04 29092315 29093430 ECH
Aev02g2258 02 23578047 23578928 Aev04g2933 04 29092315 29093430 ECH
Aev10g1955 10 20909311 20910318 Aev04g2933 04 29092315 29093430 PCT