Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g2931 ATGATGCCTAATAAGGCCACATCTAGCAGCTTCCAAAATCATGATGATCATCAAGTGGTGCACCAACACCACCACCACCACCACATGTTACCACCACCTATGACAGAATACAATATGGTAATTCCACCACCACCACCATCTTCATCTTCATCAACCCTTCTCTATTACTACCTTTCAATTCTGAAGGAAAAGCTTAGTGAGGTTCAGACCCTTGTTGGTGTTCTAGCCTCTCCTCAAGATTCAACAACTTCCATGGTCATATCCACCATGATCTCCACAATCCAAGAAATCATAGTTGCTGCAACTTCAATGAGATCATCACTCACCACCACCACCTCCCAACAAACCATTCCTCTAATTGCTTCAACACAACAACAACAAGGTACTAACAACAACATAGGACACAGTAATTTCTTATCTGAGGCAGAGGAACTCGATTGGTTTTCTGAAAGCTATAATAGTACTAGTACTAATACTAATAATAATATTGGAGTAGTAATAAGTGATGAAGTATTACTAGCCAGGGGAAAACAGAGTAATGATGATATAATTGAATTGGATGCTGCTGATTTGTTAGCAAGGTACACACATTTTTGCCAAGTTTGTGGAAAAGGGTTCAAGCGAGATGCTAATTTGAGGATGCACATGAGGGCTCATGGCGATGAATACAAAACAAATGCAGCACTAAAAAACAATAATGAGAGATTGTTGCGTAATAATAATAATAGTAAGAAGTATTCGTGCCCTGAAGAAGGGTGTAGGTGGAACAAGAAGCATGAGAGGTTTCAGCCATTGAAGTCGATGATCTGTGTGAAGAATCATTACAAGAGGAGTCATTGTCCGAAGATGTATGTGTGCAAGAGGTGTAACATGAAGCAGTTTTCGGTGTTGTCTGATTTGAGGACACATGAGAAGCATTGTGGGCACCCAAAGTGGCACTGTTCTTGTGGAACCACTTTTTCTAGGAAGGATAAGCTTTTGGGACATCTTGCTTTGTTTCTTGGCCATGTTCCCGCTACTACAACTGCTTCATCATCTCTCCACCATCTTTGA 1053 0.4074 MMPNKATSSSFQNHDDHQVVHQHHHHHHMLPPPMTEYNMVIPPPPPSSSSSTLLYYYLSILKEKLSEVQTLVGVLASPQDSTTSMVISTMISTIQEIIVAATSMRSSLTTTTSQQTIPLIASTQQQQGTNNNIGHSNFLSEAEELDWFSESYNSTSTNTNNNIGVVISDEVLLARGKQSNDDIIELDAADLLARYTHFCQVCGKGFKRDANLRMHMRAHGDEYKTNAALKNNNERLLRNNNNSKKYSCPEEGCRWNKKHERFQPLKSMICVKNHYKRSHCPKMYVCKRCNMKQFSVLSDLRTHEKHCGHPKWHCSCGTTFSRKDKLLGHLALFLGHVPATTTASSSLHHL* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g2931 350 Coils Coil 226 246 - -
Aev04g2931 350 PANTHER OS08G0562300 PROTEIN 30 345 - -
Aev04g2931 350 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 30 345 IPR044300 GO:0010044|GO:0010447
Aev04g2931 350 Gene3D Classic Zinc Finger 192 253 - -
Aev04g2931 350 ProSiteProfiles Zinc finger C2H2 type domain profile. 197 224 IPR013087 -
Aev04g2931 350 SUPERFAMILY beta-beta-alpha zinc fingers 196 222 IPR036236 -
Aev04g2931 350 ProSitePatterns Zinc finger C2H2 type domain signature. 199 219 IPR013087 -
Aev04g2931 350 SMART c2h2final6 197 219 IPR013087 -
Aev04g2931 350 SMART c2h2final6 284 309 IPR013087 -
Aev04g2931 350 SMART c2h2final6 246 279 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g2931 Aev-Chr4 29077169 29078221 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g2931 54 339 C2H2 Transcription Factor Family AT5G22890 47.988 4.97e-95 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aev04g2931 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g2931 - - var:108339426 326.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev04g2931 04 29077169 29078221 Aev04g2931 04 29077169 29078221 ECH
Aev10g1956 10 20917620 20918945 Aev04g2931 04 29077169 29078221 PCT