Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g2864 ATGTACAGTAATTTCAAGGAGCAAGCGATAGAGTACGTGAAGCAAGCGGTGCAAGAGGACAACAATGGCAACTACGCGAAAGCCTTCCCTCTGTACATGAACGCCTTGGAGTACTTCAAGACGCACCTCAAGTACGAGAAGAACCCAAAGATCAAGGAGGCCATCACGCAGAAATTCACCGAGTATCTTCGCCGGGCAGAGGAGATCCGTGCCGTCCTCGATGATGGTGGGCCTGGGCCTGGGGCCAACGGGGACGCCGCCGTCGCCACGCGGCCCAAGACGAAGTCCAAGGGCGGGGAAGGAGGGAGTGGAGGTGGAGGGGATGGGGAGGATCCGGAGCAGGCGAAGCTGAGGGCGGGGCTGAACTCAGCGATCATAAGGGAGAAGCCGAACGTGAAGTGGAACGATGTAGCTGGGTTGGAGAGCGCCAAGCAGGCGTTGCAGGAGGCGGTTATCTTGCCCGTGAAGTTCCCTCAGTTCTTCACTGGTAAAAGACGACCTTGGAGAGCGTTTTTGTTGTATGGACCACCTGGAACAGGTAAATCATATTTGGCCAAAGCAGTTGCGACAGAAGCTGACTCCACATTTTTCAGTGTTTCATCTTCAGACTTGGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTGGTTTCAAACCTTTTCGAAATGGCTCGAGAAAGTGCACCTTCTATCATATTTATTGATGAAATAGATTCACTATGTGGTCAGCGTGGTGAAGGCAATGAGAGTGAAGCTTCCAGACGAATTAAAACTGAACTTCTAGTGCAGATGCAGGGTGTAGGACACAATGACCAGAAAGTCCTTGTTCTTGCAGCAACAAATACTCCTTATGCTCTTGACCAGGCGATAAGGCGACGTTTTGATAAGCGTATATATATTCCACTACCAGATTTGAAGGCTCGCCAACACATGTTCAAGGTGCATCTAGGAGATACACCTCATAACTTGACTGAAAGTGATTTTGAACACTTGGCTCGCAGGACGGATGGATTTTCAGGTTCAGATATATCCGTTTGTGTGAAGGATGTGTTATTTGAACCTGTTCGCAAAACCCAAGACGCCATGTTTTTCTTTAAGAATCCTGAGGGTATGTGGATCCCATGTGGACCAAAGCAACAGGGTGCAGTACAAATCACGATGCAGGAGCTTGCTGCGAAAGGACTTGCATCTCAGATCCTTCCACCACCTATATCGAGAACCGATTTTGACAAGGTGCTTGCTAGACAACGGCCTACAGTGAGCAAAGCCGACCTTGATGTTCATGAGAGATTCACAAAGGAGTTTGGAGAGGAAGCTATTGGAGCAAAGTGA 1329 0.4913 MYSNFKEQAIEYVKQAVQEDNNGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGGPGPGANGDAAVATRPKTKSKGGEGGSGGGGDGEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFEMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFEHLARRTDGFSGSDISVCVKDVLFEPVRKTQDAMFFFKNPEGMWIPCGPKQQGAVQITMQELAAKGLASQILPPPISRTDFDKVLARQRPTVSKADLDVHERFTKEFGEEAIGAK* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g2864 442 CDD AAA 138 301 - -
Aev04g2864 442 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Aev04g2864 442 Pfam ATPase family associated with various cellular activities (AAA) 172 301 IPR003959 GO:0005524|GO:0016887
Aev04g2864 442 SMART AAA_5 167 303 IPR003593 -
Aev04g2864 442 Pfam Vps4 C terminal oligomerisation domain 371 435 IPR015415 -
Aev04g2864 442 SUPERFAMILY MIT domain 2 83 IPR036181 -
Aev04g2864 442 PANTHER AAA DOMAIN-CONTAINING 1 437 - -
Aev04g2864 442 Gene3D - 303 418 - -
Aev04g2864 442 MobiDBLite consensus disorder prediction 72 114 - -
Aev04g2864 442 Gene3D - 130 426 IPR027417 -
Aev04g2864 442 SMART smart 2 79 IPR007330 -
Aev04g2864 442 Gene3D - 6 75 - -
Aev04g2864 442 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 1 437 - -
Aev04g2864 442 ProSitePatterns AAA-protein family signature. 273 292 IPR003960 GO:0005524|GO:0016887
Aev04g2864 442 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 130 433 IPR027417 -
Aev04g2864 442 CDD MIT_VPS4 4 77 IPR045253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g2864 Aev-Chr4 28368634 28373305 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g2864 166 359 Calmodulin-binding Proteins AT3G56690 37.245 4.91e-35 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g2864 K12196 - gmx:100788150 814.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev04g2864 04 28368634 28373305 Aev04g2864 04 28368634 28373305 ECH
Aev10g2181 10 22232288 22235296 Aev04g2864 04 28368634 28373305 ECH
Aev10g2181 10 22232288 22235296 Aev04g2864 04 28368634 28373305 PCT