Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g2858 ATGAAGATGGGTTTGATGAGAGAAAATTGCAAAAATAATGATGAGAGAAAATTGTACTACCAACAATACCCTAATTTCATTGAGTGGCTCAAACCATTATCTTCCAATAATATTCCTAATTTCACTACTACTACTACTTCATCATCAATTTCATCAACACCAAACCCATCTTCATCTTCTAATTCTTGTTCATGTTCTAATGAGATAATCCAAGAGACAATCCAATTCTTGCCAATTTTAGCCTCCTCATCATCAAAAGAAGTAGAGGAGGTGATGATGAAAGAAGAAGAAGAGAAGGTGGAACAAGTAACTGTGGCTTTGCACATTGGATTGCCTAATAACAAAATTGAATTAGGAGAAGAAGAAGATGATGATAATAATAATCATGTGAAGCAAGAATTAGAGGAGGAAGAAGAAGAAGAAGAAGAGAAAAGAAGTAATTATAATAATAATAATGGATACTACAAGGAGGAGGATCAAAGGAGGTTTTGGATACCAACACCAGCTCAAATACTTGTTGGCCCTATGCAATTTGCTTGCTCCATTTGTAGCAAGACCTTCAATAGGTATAACAATATGCAGATGCATATGTGGGGTCATGGGTCAGAATTCAGGAAAGGACCAGACTCACTGAGAGGAACACAACCAGCTGCAATGCTTAGGCTACCATGTTATTGTTGTGCTCAAGGTTGCAAGAACAACATTAACCATCCAAGAGCAAAGCCTTTGAAGGATTTCAGAACACTCCAAACACATTACAAGAGAAAGCATGGTTCAAAGCCCTTTATGTGTAGGAAATGTGGGAAGACTTTTGCAGTCAAAGGGGATTGGAGGACTCATGAGAAGAATTGTGGCAAGTTGTGGTATTGCACTTGTGGTTCTGATTTTAAGCATAAGAGGTCACTTAAGGATCACATTAGATCCTTTGGAAAGGGTCATAATCCACACCCTCCTCTTGAAGAAGATGAGAAGGAATGCATCACTGGGTCTGATGAAGATGATAACCAACAGGTTCATGAAACAAGGTCCCATGCACATGCACATGGGGAAGAAGATAAGGTAATTATGACAAGGAAGCAGAAGGCAGAGTCCAACAAGGCACATGAAGTGGAACATTCTCCTAAGAAGGCTAAGGTGGAAAATGATGAGGATGGTCACACCAATGGAAAATCTGCATCTGATGTTACTGCAGAATATGATGACTTCTGCAAGGCCACAAATGAGCACCTTTCTATTGAGCAAATGAAAGAGATTCTTGAAGCTAATGGCCTTGATTCCTCTGGCTCTGACATTGAAATCACAAGGAGATGCCAAGACTTGCTGTTTTATGGTGCATTAGAGATATGCCCTGTTTGCAATGGCAATTTGGAGTTCGATGGAAGGAGATATTCTTGTAGAGGGTTCTATAGTGAGTGGTCTAGTTGCACTTTCAGCACAAGAGACCCTTCAAGGAAAGAGGAACCTACTAAGCTACCAGATTCTGTTCAGAATTCTCTTGCTTCAGATTTGCTAAAGAAATATCAGAACCCTGGTCACAGGCCACACAGGGATTTAGGCTCAGCAGACAAGCCTTTTACTGGGATGATGATATCATTGATGGGTCGTCTTTCTAGGACACATCACCATTGGAGAACAACTATTGAAAAGCATGGAGGGAAGGTGGCAAACTCTATAATTGGGGCAACTTGTTTGGTAGCTTCACCTGCTGAAAGAGAGCGTGGAGGCACATCAAAACTTGCAGAAGCCATGGAAAGGGGTATACCTGTGGTAAGGGAGGCTTGGTTGACTGAAAGCATTGAAAAGCAAGAACCACAACCTTTGGAAGCTTATGAGCTTGTCTCTGATCTCTCAGTAGCTGGCAAGGGAATTCCCTGGGACAAACAAGATCCTGGGGAGGAAGCTATTGAATCATTTTCATCACAACTTAAGCTTTATGGGAAAAGAGGGGTCTATAAAGACACCAAATTGCAGGACATAGGAGGAAAGATATTTGAAAAAGATGGGATATTGTACAACTGTGCCTTCTCTCTATGTGACCAAGGGAGAGGAGTGAATGATTTCTGTGTGATGCAACTGATTATGGTCCCAGAGAATCGTTTGCACCTATACTTCAAGAAAGGGAGAGTTGGAGATGATCCAAATGCAGAGGAGAGGTTAGAAGAGAAGGATAATGTGAACAATGCTATGAAAGAGTTTGTGAGGCTCTTTGAGGAAATAACTGGGAATGAGTTTGAACCTTGGGAAAGAGAGAAGAAGTTCCAGAAGAAGCCACTGAAGTTTTACCCTATTGACATGGATGATGGAGTTGAAGTCCGGCACGGCGCGCTGGGGCTCCGGCAGCTGGGGATAGCAGCAACACACTGTAAACTAGAGCCGTTAGTTGCAAACTTTATGAAGGTTATGTGCAGCCAGGAGATATACAAGAATGGTTACAAATCTTCACCTGAAAAGATGTATGCAAGTGGACAACACTTTCTTTTTGCTATTTCTGTAATGTCCCATTCCACAAAGACTGACACAATAGAAACTCCACCAGGTGAGGAAATTTTGCTAGAATTCATAGAGAAGGTGAAATCATTGAATGAGACTGGACCAAAAGCTGAAGCTGTTTGGACTGATTTTAGCCAAAGATGGTTCACTTTAATGCATTCAACAAGGCCTTTCAATTTCAGAGATTATCAGGAGATTGCAGATCATGCTGCTGCCGCGTTGGAGGGCGTTAGGGACATAACTGTGGCTTCAAACCTCATAGGAGATATGAGTGGTGCTACCATTGATGACCCTTTATCAGCAGCATATAACAAATTGGGTTGCACAATTTCTCCTTTGGAAAAGGATTCAAATGACTATGATATGATAGTTAAATACCTGGAAAAAACTTATGAACCTGTCAAAGTTGGTGACATTGAATATGGGGTTTCTGTTGAGAACATATTTGCTGTGGAACCAAGTGCCTGCCCTCCTTATGAGGACATAGTGAAGCTACCAAACAAGGTTCTTCTATGGTGTGGATCACGAAGCTCAAATCTTCTGAGGCACTTGCACAAGGGGTTCCTACCTGCAATATGTTCACTACCTGTCCCGGGTTACATGTTTGGGAAGGCTATAGTTTGTTCTGATGCAGCAGCCGAGGCTGCAAGATATGGTTTCACTGCTGTAGACAGGCCAGAAGGGTTCTTGGTTTTGGCCATTGCTTCACTAGGGAATGAGACAACCGAGTTGAAAAGCGCACCTGAGGACACAGCATCTTTGGAAGGAAAGAAGGTTGGAGTGAAGGGGCTGGGGAGGAAGAAAACAGATGAATCAGAGCACTTTGTTTGGAAAGATGACATTAAAGTTCCTTCAGGAAAAATTGTAGCCTCAGAGCATAAGGATAGTCCCTTGGAATACAATGAATATGCAGTGTATGATCCTAAGCAGGTAAGGATATGCTACTTGGTGGGAGTCAAGTATGAAGAGAAAGGAGCAGTGATAGACACAGCAGAGTGA 3489 0.4185 MKMGLMRENCKNNDERKLYYQQYPNFIEWLKPLSSNNIPNFTTTTTSSSISSTPNPSSSSNSCSCSNEIIQETIQFLPILASSSSKEVEEVMMKEEEEKVEQVTVALHIGLPNNKIELGEEEDDDNNNHVKQELEEEEEEEEEKRSNYNNNNGYYKEEDQRRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGSKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHNPHPPLEEDEKECITGSDEDDNQQVHETRSHAHAHGEEDKVIMTRKQKAESNKAHEVEHSPKKAKVENDEDGHTNGKSASDVTAEYDDFCKATNEHLSIEQMKEILEANGLDSSGSDIEITRRCQDLLFYGALEICPVCNGNLEFDGRRYSCRGFYSEWSSCTFSTRDPSRKEEPTKLPDSVQNSLASDLLKKYQNPGHRPHRDLGSADKPFTGMMISLMGRLSRTHHHWRTTIEKHGGKVANSIIGATCLVASPAERERGGTSKLAEAMERGIPVVREAWLTESIEKQEPQPLEAYELVSDLSVAGKGIPWDKQDPGEEAIESFSSQLKLYGKRGVYKDTKLQDIGGKIFEKDGILYNCAFSLCDQGRGVNDFCVMQLIMVPENRLHLYFKKGRVGDDPNAEERLEEKDNVNNAMKEFVRLFEEITGNEFEPWEREKKFQKKPLKFYPIDMDDGVEVRHGALGLRQLGIAATHCKLEPLVANFMKVMCSQEIYKNGYKSSPEKMYASGQHFLFAISVMSHSTKTDTIETPPGEEILLEFIEKVKSLNETGPKAEAVWTDFSQRWFTLMHSTRPFNFRDYQEIADHAAAALEGVRDITVASNLIGDMSGATIDDPLSAAYNKLGCTISPLEKDSNDYDMIVKYLEKTYEPVKVGDIEYGVSVENIFAVEPSACPPYEDIVKLPNKVLLWCGSRSSNLLRHLHKGFLPAICSLPVPGYMFGKAIVCSDAAAEAARYGFTAVDRPEGFLVLAIASLGNETTELKSAPEDTASLEGKKVGVKGLGRKKTDESEHFVWKDDIKVPSGKIVASEHKDSPLEYNEYAVYDPKQVRICYLVGVKYEEKGAVIDTAE* 1163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g2858 1162 MobiDBLite consensus disorder prediction 307 393 - -
Aev04g2858 1162 Pfam PADR1 (NUC008) domain 435 485 IPR012982 -
Aev04g2858 1162 ProSiteProfiles SAP motif profile. 407 441 IPR003034 -
Aev04g2858 1162 SMART PADR1_2 433 486 IPR012982 -
Aev04g2858 1162 Pfam WGR domain 671 750 IPR008893 -
Aev04g2858 1162 ProSitePatterns Zinc finger C2H2 type domain signature. 180 200 IPR013087 -
Aev04g2858 1162 Pfam BRCA1 C Terminus (BRCT) domain 522 599 IPR001357 -
Aev04g2858 1162 Gene3D - 937 1153 - -
Aev04g2858 1162 ProSiteProfiles WGR domain profile. 660 760 IPR008893 -
Aev04g2858 1162 SUPERFAMILY ADP-ribosylation 936 1153 - -
Aev04g2858 1162 SUPERFAMILY beta-beta-alpha zinc fingers 162 201 IPR036236 -
Aev04g2858 1162 Gene3D - 783 936 IPR036616 GO:0003950
Aev04g2858 1162 SMART BRCT_7 522 602 IPR001357 -
Aev04g2858 1162 ProSiteProfiles BRCT domain profile. 520 612 IPR001357 -
Aev04g2858 1162 CDD BRCT_PARP1 525 600 - -
Aev04g2858 1162 SUPERFAMILY beta-beta-alpha zinc fingers 244 282 IPR036236 -
Aev04g2858 1162 ProSiteProfiles PARP catalytic domain profile. 927 1158 IPR012317 GO:0003950
Aev04g2858 1162 MobiDBLite consensus disorder prediction 307 389 - -
Aev04g2858 1162 Gene3D Classic Zinc Finger 258 318 - -
Aev04g2858 1162 MobiDBLite consensus disorder prediction 44 64 - -
Aev04g2858 1162 Gene3D BRCT domain 518 619 IPR036420 -
Aev04g2858 1162 Coils Coil 120 151 - -
Aev04g2858 1162 CDD parp_like 787 1150 - -
Aev04g2858 1162 SMART c2h2final6 225 257 IPR013087 -
Aev04g2858 1162 SMART c2h2final6 178 200 IPR013087 -
Aev04g2858 1162 SMART c2h2final6 262 282 IPR013087 -
Aev04g2858 1162 ProSiteProfiles Zinc finger C2H2 type domain profile. 262 282 IPR013087 -
Aev04g2858 1162 CDD WGR_PARP1_like 661 767 - -
Aev04g2858 1162 SUPERFAMILY WGR domain-like 636 765 IPR036930 -
Aev04g2858 1162 Pfam Poly(ADP-ribose) polymerase catalytic domain 947 1150 IPR012317 GO:0003950
Aev04g2858 1162 PANTHER POLY [ADP-RIBOSE] POLYMERASE 337 1153 - -
Aev04g2858 1162 SMART WGR_cls 671 754 IPR008893 -
Aev04g2858 1162 ProSiteProfiles Zinc finger C2H2 type domain profile. 178 205 IPR013087 -
Aev04g2858 1162 Gene3D - 392 514 - -
Aev04g2858 1162 PANTHER DNA LIGASE 337 1153 - -
Aev04g2858 1162 MobiDBLite consensus disorder prediction 116 153 - -
Aev04g2858 1162 MobiDBLite consensus disorder prediction 476 495 - -
Aev04g2858 1162 SUPERFAMILY Domain of poly(ADP-ribose) polymerase 787 937 IPR036616 GO:0003950
Aev04g2858 1162 SUPERFAMILY BRCT domain 517 624 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g2858 Aev-Chr4 28318548 28336138 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g2858 12 328 C2H2 Transcription Factor Family AT1G08290 56.342 1.06e-112 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aev04g2858 PARP 8.5e-46 CL0084
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g2858 K10798 - gmx:548024 1384.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev10g2178 10 22220620 22222521 Aev04g2858 04 28318548 28336138 PCT