Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g2846 ATGCCACGGGGAAAGGCAAATTCTTCATCAGTTGCTAAGCCATCCAAGACTGAAAATCCAGTTGAATCTGATGAGAAGGTTGATTTTGATGATGCAAATGATCCTGAAGAAGCAATGGAAGAAGAAATTGAATATGAAGAAGTAGAAGAGGAAGAGGAAGTGGAAGAAATAGAAGAGGAAGTGGAAGAAGAGGAAGAGGACCCCGAGGAGGAGGAGGAGGAGGTGGAGGTTGAGGAAGAGGAAGAAGAGGAGGAGGAGGAAGAGGAGGAGGTGGAGGATGAAGAAGTGGAAGAAGATGATACCATGCAAAACCGTAACAAGGCAGAGGATAAGGATGAGGAAAAAAAGCATGCTGAACTTCTTTCTCTCCCTCCTCATGGGTCCGAAGTATACATTGGTGGTATTCCATTTGATGTGTCAACTCAGGATTTGAAAGCCTTTTGTGAGTCTATTGGAGAAGTTACAGAGGTTCGAATAATGAAAGGAAAAGATTCTTCTGAGAATAAGGGCTTTGCTTTTGTGACTTTTAGGAGTAAGGAATTGGCTTCTAAAGCCATTGAGGAGCTGAATAATAAAGAATTCAAGGGAAAAAAAATAAAATGTTCAACAGCTCAAGCAAAACATCGTCTTTTTATCGGCAATGTTCCTAAAAGCTGGAGTGATGAAGATCTTAAGAAGGTTATAACTGATATTGGACCTGGAGTTACTGGTTTAGAACTAGTCAGGGATATGAAGAACACAAAAAATAACCGTGGATTTGCTTTTATTGAATATTATAATCATGCATGTGCTGAATATTCAAGGCAAAAGATGATGAGCGCAACATTTAAGCTAGGTGACAATGCTCCAACAGTTAGCTGGGCTGACCCTAAAAATGCTGATTCCTCTGCCTCATCTCAGGTAAAGGCAGTATATGTGAAGAACTTGCCTAAGAATGTAACTCAGGAGCAGTTGAAGAAGCTTTTTGAACACCATGGGAAGATCACAAAGGTGGTTCTTCCACCAGCAAAGTCTGGACAGGAAAGGAACAGAATTGGTTTTGTACATTTTGCAGAGAGGTCAAGTGCTATGAAAGCACTAAAAAACACCGAAAGATATCAATTAGAAGGCCAAATTTTGGAATGCTCTTTAGCAAAGCCACAAGCTGATCAAAAGTCTGGAGCCTCAAATGTGCCCAAGCCAGGACTGCTTCCAACTTATCCACCACAAGTTGGTTATGGTTTGGTTGGCGGTGCCTATGGTGCCCTTGGCGGAGGATATGGTGCTCCTGGTCTTGCTCAGCCCTTGATGTATGGAAGGGGTGCACCTCCCCCTGGAATGGCCATGATGCCTATGCTTCTAGCTGACGGCCGGATCGGATACGTCTTACAACAACCAGGTCCAGGTATGCCACAACAAACGCCGCCCTCCCATCATAGAGGTGGCCGTGGTGGCGGCGGCGGTAGTGGCAGCAGAAATGCTGGCAGTTCAAGTAAGGGAAGGCACAACAATGACAGCGGCCAAGGGCGCAGATATCGTCCATATTAG 1527 0.4434 MPRGKANSSSVAKPSKTENPVESDEKVDFDDANDPEEAMEEEIEYEEVEEEEEVEEIEEEVEEEEEDPEEEEEEVEVEEEEEEEEEEEEEVEDEEVEEDDTMQNRNKAEDKDEEKKHAELLSLPPHGSEVYIGGIPFDVSTQDLKAFCESIGEVTEVRIMKGKDSSENKGFAFVTFRSKELASKAIEELNNKEFKGKKIKCSTAQAKHRLFIGNVPKSWSDEDLKKVITDIGPGVTGLELVRDMKNTKNNRGFAFIEYYNHACAEYSRQKMMSATFKLGDNAPTVSWADPKNADSSASSQVKAVYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPAKSGQERNRIGFVHFAERSSAMKALKNTERYQLEGQILECSLAKPQADQKSGASNVPKPGLLPTYPPQVGYGLVGGAYGALGGGYGAPGLAQPLMYGRGAPPPGMAMMPMLLADGRIGYVLQQPGPGMPQQTPPSHHRGGRGGGGGSGSRNAGSSSKGRHNNDSGQGRRYRPY* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g2846 508 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 304 371 IPR000504 GO:0003723
Aev04g2846 508 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 130 200 IPR000504 GO:0003723
Aev04g2846 508 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 276 IPR000504 GO:0003723
Aev04g2846 508 MobiDBLite consensus disorder prediction 1 116 - -
Aev04g2846 508 SUPERFAMILY RNA-binding domain, RBD 297 391 IPR035979 GO:0003676
Aev04g2846 508 MobiDBLite consensus disorder prediction 24 99 - -
Aev04g2846 508 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 128 206 IPR000504 GO:0003723
Aev04g2846 508 MobiDBLite consensus disorder prediction 100 116 - -
Aev04g2846 508 CDD RRM_SF 130 202 - -
Aev04g2846 508 Coils Coil 38 111 - -
Aev04g2846 508 SMART rrm2_1 303 376 IPR003954 GO:0003676
Aev04g2846 508 SMART rrm2_1 129 202 IPR003954 GO:0003676
Aev04g2846 508 SUPERFAMILY RNA-binding domain, RBD 125 294 IPR035979 GO:0003676
Aev04g2846 508 Gene3D - 290 395 IPR012677 -
Aev04g2846 508 SMART rrm1_1 129 202 IPR000504 GO:0003723
Aev04g2846 508 SMART rrm1_1 303 376 IPR000504 GO:0003723
Aev04g2846 508 SMART rrm1_1 209 286 IPR000504 GO:0003723
Aev04g2846 508 Gene3D - 5 208 IPR012677 -
Aev04g2846 508 PANTHER RNA RECOGNITION MOTIF 1 481 - -
Aev04g2846 508 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 302 380 IPR000504 GO:0003723
Aev04g2846 508 Gene3D - 209 289 IPR012677 -
Aev04g2846 508 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 481 - -
Aev04g2846 508 MobiDBLite consensus disorder prediction 455 508 - -
Aev04g2846 508 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 290 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g2846 Aev-Chr4 28199592 28203075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g2846 130 480 Eukaryotic Initiation Factors Gene Family AT4G34110 25.575 3.02e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g2846 K13161 - gmx:100806658 617.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev04g2846 04 28199592 28203075 Aev04g2846 04 28199592 28203075 ECH