Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g2812 ATGGGTGTACCCTCTTTCTATAGGTGGCTAGTAGAGAAATATCCGAAGGTGGTTGTGAAAGCAAAAGAAGATGATGACGTGGACACAACAAAACCAAACCCAAATGGGATTGAGTTTCATAATTTGTATCTTGACATGAATGGGATCATTCACCCATGTTTTCATCCAGATGATGATAATCTAAATAGTTCAATTACTACTCCTACTACGTTCGAAGATGTGTTTGAGAATATGTTTAGCTACATTGATCGTCTTGTGAGAATTGTTAGGCCTCGCAAGCTCTTATACATGGCTATCGATGGGGTAGCTCCACGCGCCAAAATGAACCAGCAAAGAGCAAGGCGTTTCAGAACAGCAAAGGACAATAGCATACGTGAAGCTGAAGAAGACAGGCTTCGGAAGCAATTTGAAATGGAAGGCAAACAAATTCTTCCTAAACAAGAAACTGAAGTGTCGGATTCTAACATCATAACACCTGGTACAAAATTTATGCATGAACTCTCAAAGGCACTTCAAAGCTATATCTCCACAAGGATAGCAAGTGATTCATTATGGAGGGATATCATGGTGATTATATCTGATGCTAATGTTCCGGGTGAAGGAGAACACAAAATTATGTCCTACATTCGTAGAGAGAGAAGTCTCCCTGAGTATAATCCTAACACAAGACACTGTATATATGGTTTGGATGCTGATCTTATAATGCTTGCTCTTTCAACTCACGAGCCACACTTTTCAGTACTCAGAGAGGACGTGCTTAGACAAGATCATCAGCCAAAAACTTCAGCTAAGCCATATGAGTTTCTACATGTTTGGTTATTGAGGGAGTATCTAGAGTCAGACATGAAGATAGAAAGTCCACCAAAGAATTGTGACATTGATTTTGAGAGGATTGTTGATGACTTCATCTTCATGTGTTTCTTTGCTGGAAATGATTTTCTTCCTCACATGCCATCATTGGAAATTCATGAGGATGCAATAGATTTATTAGTAACTGTTTACAAGACAGAATTTAACAAAATTGGTGGATTTCTTGTTGATATGAGCAGGGTTGGGGAGAAACATGCTGCTTTTGTTAAGCTTTCGAGGGTCGAGAAATTTATAAGAATGGTTGGTGAATATGAAGAGAAGATTTTCAAGAAAAGATCCGAAATAAGAGAGCGGAAATTGAGAAGGCTTGTCAGAGATCATGAAGAAGCAAAGCATGAACAAGGGAGTGGAACTTTTTTCTCAGAGCTTGATGAGGAATGTAGTTCAGATTGCACTCTTCTTATTAACAAGGAAAGGGTTTTTAGTAATTCCCCTGCTGAAATTTTGCAGAACACTAAAGATTTGAAAGAGCAAGTTAATAGAATCATTAAACAGAAATCAGACCTTTTTAAGAGTGGAGAGTTCCTAATTGACAAGATAAAATTGGGCACTTCTGGTTTCAAAGAAAGATACTATAAGGAGAAGTTTTCAGTGGAAGGACCCTCTAATATTGAGTCCTTAAGGAAAGAAATAGTTCAGAAATACACAGAGGGATTGGTTTGGGTGCTTCAATACTATTTTTCTGGTGTAGCTTCATGGACTTGGTTTTATCCTTATCATTATGGTCCATTTGCTTCTGACTTAAAAGGCATGGGTCAAGTTAGAGTCAATTTTGAGAAAGGTGTTCCATTCTTACCTTTTGATCAACTCCTAAGTGTTCTTCCACCAAGGAGTGCTCATGCACTTCCAGATGCTCATGCACAATTGATGTTGGATGAGAATTCTCCTATTTTTGGGTATTACCCACTTGATTTTGATGTTGACACAGAAGGGAAGCGATTCTTGTGGCAGGGTATCTGCAAGCTTCCATTCATCGATGAAAGATCACTGTTGGCTGAAACCAGGAAACTTAACAAGGGATTATCTATAGATGAATCGGTCAGAAATTCTGTCAAAGTTGATCGCTTGTTTGTCAGAAGCACTAGCGAATTGGGAGTGAAAATTTGCTCCCTTCCTTTCGAGTCGAATGGATCTTCCAAGTTTGAGTCTAGCATAAGCACTGGTGGCGTTTTTGGCCTCATTAGTTTTTGTGATGATGGATATGGGAAGCCTTGCTTGGGGATCAAGAATTGCGGCGACAAACCTAATGAAGATCATGTCTTATGTTTCGGTTTCAAGCCGCCGGTTGGTAGTTATTGTCATGTTCCACGCTTACTATCCGGTGTTAATCTTCCACCAAAGAGTGTATCTGAGGGTGACATTATAGAAACACACTATGGCATGAGCGTCAGAGACAAGGTCCTTATGCAAGTCATACACAAAAATGCTGGTGTTGGATGGGGTAAAGGTAGAGGCAATTCTATGAGAGACACAACAAGGCCCCAACAAAATGTTGAAAGCTTTAGCAAACTAACAAAATCAGAGCCTAGTCAACAACCTAGGACTATTGGTAGAGGTCAGTTTTGGTCAAACCAGAATAGTTTCAATAATGTGTCTAATAACAATGGCTCTTACCAAGGTTCTCAATCTGGGACTAGTCCTTATGGTTGGGGACGTGGTACCCTTAAGCATGGTTCTAGTGGTTCTTCTAATGGCTCTTTGACGCCTCAATGGATTGCTTCAAAAGGTCACCAAGAAAAAGATCAAAAACGTTGTTGCCAAACACCCAGATCTCTCTTCTTCCATTTCCCTCTCGATCCCTCCCGGCTGGCGGAGATGTCCGCCACTCAACCTCCTTCCTCCTCCTCCGCCGCTGCTACTGCCGCCAACCCGCCGGAGCAGATCATGCGGCGCCAACTCCCCTTCTCCGTCTTGAAGCCGCCCTTCACTGCCGCCGCCGCCGCCGCCGGAGATTACCATCGCTTCTCCCCCGACCACCACCACCGCCGAACTGTTGACCACGAAGCCGAAGCCATCGTCGTCAAGTCTCCTCAATTGAAGCGGAAGAGTGACACAGCTGATTTTGAAGCTGATTCTGCTGATAGGATGAATCCTGGATCCACTGGAGGAGCTAATAGTCCTCTCCAAACGCCTATGTCTGGAAAGACGGGGAAGGGTGGCAAATCCTCCAGGCTTACAAAATCCAATAGATCTGGGCCTCAAACCCCAGGCTCAAATATTGGGTCTACTTTGTTCAATAATCTCACTCCTGGCGGTCCATGCCGTTATGACAGCTCTTTAGGTCTGTTGACAAAGAAATTCATCAATTTGATCAAGCAAGCAGAGGATGGTATTCTTGATCTGAATAAAGCTGCTGACACATTAGAGGTGCAAAAGAGGAGAATATATGACATAACAAATGTTCTTGAAGGGATTGGCCTTATAGAAAAGAAGCTAAAAAACAGAATTCAGTGGAAGGGACTTGATGTTTCAAGACCAGGGGAGGCTGATGATAGTTTTGGTAGTTTACAGGCAGAAGTTGAAAATCTTACAATGCAGGAGCGCCGGTTAGATGAACAAATAAGGGAGATGCAAGAACGACTACGGGATCTTAGTGAAGACGAAAACAATGAGAAGTTGCTTTTTGTCACCGAGGAAGATATAAAGAACTTGCCCTGCTTCCAGAATGAAACCTTGATTGCAATTAAAGCTCCACATGGCACCACTCTAGAGGTCCCTGATCCCGATGAGGCTGCTGATTATCCCCAGCGGAGATACAGGATAGTCCTCAGAAGCACAATGGGCCCAATAGATGTTTACCTTGTTAGTCAATTTGAAGAAAAGTTTGAGGAGGAGATTAATGGTGAAGATGTTGCACCCGAGATTCCATCAAATCCAGAATTTAGCAACCAGAAATCAACAATGGCCTTTGAGGATAGAGGGAAGAACATAGAGGTGCAGGGACAAGATGGTCCTGGGCCTAGTTCTGATTTAGCTACCACACAAGACTTTGTGAGTGGGATCACAAAGATTGTTCCTTCAGATGTTGACAGCGATGCGGATTACTGGCTTTTATCAGATGCTGAAGTTAGCATAACAGACATGTGGAGAACAGAACCTGGAGTTGAATGGAATGAACTGGGTATAGTTCAAGATTATTGTATGACTCGAGAGCACACTACAACCCCATCTCATCCTTCAAATGTAAATGAAGCGGCTACTACTGCATCCGATCCTACCGGAGGTTGA 4098 0.4244 MGVPSFYRWLVEKYPKVVVKAKEDDDVDTTKPNPNGIEFHNLYLDMNGIIHPCFHPDDDNLNSSITTPTTFEDVFENMFSYIDRLVRIVRPRKLLYMAIDGVAPRAKMNQQRARRFRTAKDNSIREAEEDRLRKQFEMEGKQILPKQETEVSDSNIITPGTKFMHELSKALQSYISTRIASDSLWRDIMVIISDANVPGEGEHKIMSYIRRERSLPEYNPNTRHCIYGLDADLIMLALSTHEPHFSVLREDVLRQDHQPKTSAKPYEFLHVWLLREYLESDMKIESPPKNCDIDFERIVDDFIFMCFFAGNDFLPHMPSLEIHEDAIDLLVTVYKTEFNKIGGFLVDMSRVGEKHAAFVKLSRVEKFIRMVGEYEEKIFKKRSEIRERKLRRLVRDHEEAKHEQGSGTFFSELDEECSSDCTLLINKERVFSNSPAEILQNTKDLKEQVNRIIKQKSDLFKSGEFLIDKIKLGTSGFKERYYKEKFSVEGPSNIESLRKEIVQKYTEGLVWVLQYYFSGVASWTWFYPYHYGPFASDLKGMGQVRVNFEKGVPFLPFDQLLSVLPPRSAHALPDAHAQLMLDENSPIFGYYPLDFDVDTEGKRFLWQGICKLPFIDERSLLAETRKLNKGLSIDESVRNSVKVDRLFVRSTSELGVKICSLPFESNGSSKFESSISTGGVFGLISFCDDGYGKPCLGIKNCGDKPNEDHVLCFGFKPPVGSYCHVPRLLSGVNLPPKSVSEGDIIETHYGMSVRDKVLMQVIHKNAGVGWGKGRGNSMRDTTRPQQNVESFSKLTKSEPSQQPRTIGRGQFWSNQNSFNNVSNNNGSYQGSQSGTSPYGWGRGTLKHGSSGSSNGSLTPQWIASKGHQEKDQKRCCQTPRSLFFHFPLDPSRLAEMSATQPPSSSSAAATAANPPEQIMRRQLPFSVLKPPFTAAAAAAGDYHRFSPDHHHRRTVDHEAEAIVVKSPQLKRKSDTADFEADSADRMNPGSTGGANSPLQTPMSGKTGKGGKSSRLTKSNRSGPQTPGSNIGSTLFNNLTPGGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADDSFGSLQAEVENLTMQERRLDEQIREMQERLRDLSEDENNEKLLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAADYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEEINGEDVAPEIPSNPEFSNQKSTMAFEDRGKNIEVQGQDGPGPSSDLATTQDFVSGITKIVPSDVDSDADYWLLSDAEVSITDMWRTEPGVEWNELGIVQDYCMTREHTTTPSHPSNVNEAATTASDPTGG* 1366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g2812 1365 PANTHER 5'->3' EXORIBONUCLEASE 1 772 IPR027073 -
Aev04g2812 1365 MobiDBLite consensus disorder prediction 959 981 - -
Aev04g2812 1365 MobiDBLite consensus disorder prediction 896 912 - -
Aev04g2812 1365 Gene3D - 146 356 - -
Aev04g2812 1365 Gene3D - 1 129 - -
Aev04g2812 1365 SUPERFAMILY E2F-DP heterodimerization region 1124 1227 IPR037241 -
Aev04g2812 1365 MobiDBLite consensus disorder prediction 894 914 - -
Aev04g2812 1365 MobiDBLite consensus disorder prediction 1341 1365 - -
Aev04g2812 1365 Gene3D - 1039 1112 IPR036388 -
Aev04g2812 1365 Pfam E2F/DP family winged-helix DNA-binding domain 1047 1110 IPR003316 GO:0005667|GO:0006355
Aev04g2812 1365 CDD PIN_XRN1-2-like 42 278 - -
Aev04g2812 1365 SUPERFAMILY "Winged helix" DNA-binding domain 1045 1108 IPR036390 -
Aev04g2812 1365 Coils Coil 1061 1081 - -
Aev04g2812 1365 MobiDBLite consensus disorder prediction 778 839 - -
Aev04g2812 1365 MobiDBLite consensus disorder prediction 846 865 - -
Aev04g2812 1365 MobiDBLite consensus disorder prediction 770 870 - -
Aev04g2812 1365 Pfam E2F transcription factor CC-MB domain 1126 1226 IPR032198 GO:0046983
Aev04g2812 1365 Gene3D - 543 641 - -
Aev04g2812 1365 Gene3D - 1118 1227 - -
Aev04g2812 1365 Pfam Xrn1 helical domain 293 744 IPR041412 -
Aev04g2812 1365 SMART E2F_TDP_2 1045 1110 IPR003316 GO:0005667|GO:0006355
Aev04g2812 1365 Pfam XRN 5'-3' exonuclease N-terminus 1 251 IPR004859 GO:0003676|GO:0004527
Aev04g2812 1365 Coils Coil 1123 1164 - -
Aev04g2812 1365 MobiDBLite consensus disorder prediction 959 1034 - -
Aev04g2812 1365 MobiDBLite consensus disorder prediction 988 1034 - -
Aev04g2812 1365 PANTHER OS11G0157000 PROTEIN 1 772 - -
Aev04g2812 1365 CDD E2F_DD 1121 1227 IPR032198 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g2812 Aev-Chr4 27951469 27965503 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g2812 920 1364 E2F-DP Transcription Factor Family AT5G22220 55.789 1.71e-141 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Aev04g2812 XRN_M 9.8e-149 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g2812 - - gsj:114379404 1079.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev04g2812 04 27951469 27965503 Aev04g2812 04 27951469 27965503 ECH