Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g2796 ATGGATGATATTGAAGTCCCTACACCATTTCTATGCCCAATTTCCTTGCAAATCATGAGTGAACCTGTGACAGTTCATACAGGAATCACTTATGACAGAGAGAACATAGAAAGATGGTTATTCTCATGCAAGAACACCACATGCCCTGTAACCAAACAGAGTCTTGTACACACAGATCTCACACCAAACCACACTCTACAAAGGTTGATCCAATCTTGGTGCAATCAGAACAAAGCCTCACTTGGAACATTAATAACAGAACATCATGTTCCAACCACTGACAAAGCTCAAATCCTCAAACTTCTATCACAAGCAAGCAAATTCCCTGATGAGAAGCTCAATTGCCTCAGAAGACTCAGATCCATTGCTTTTGAATGTGAAAGTAACAAGAATTGTTTAGAATCTGCAGGGGCAATAGATTTCTTAGCTTCAACCATGAACACCAACAAAAGAAGATTACAAGACTCTGATATGATCATTGAAGCTGCAATTGAAGTCTTGTTCCACTTGAATCCATCAGGGTCTCAGCTTAAATATCTGATAAACAATGAGGAAATTCAGTTTCTTGAGTCCTTGTTTCATGTATTGAGAATTGGGAACAACCAATCTAGATCCTATGCAATATTTCTATTGAAATCAGCATTTGATGTGGCTGGTTCAACCCAATTGAGCAATGTCAGAACAGAATTCTTTGTGGAGATAATAAGGGTCATAAAAGATCAAATCTCAATGCAGTGTTCTAAATCAGCATTGAAACTTCTTGTGGAGCTTTGTTCATGGGGTAGGAACAGAGTCAAAGCAGTTGAAGCTGGTTCTGTATTAGTCCTAATTGAGCTTCTCCTCGCCGTTTGCGAACGGCGAGTCTGTGAACTGATCTTGGTGGCTCTGGAAAGGCTCTGCGGCTGCGCAGAAGGGCGCGCCGAATTGTTGAACCATAATGCTGGTTTAGCCATTGTTTCAAAGAAGATTCTGAGGGTTTCTTGCGCCGCAAGCGATAGAGGGGTTAAGATTTTGAGCTCAATTTGTAGGTACTCTGCTACTCCTAAGGTACTTCAAGAGATGTTGGTGGTTGGTGCTGTGTCAAAGTTGTGTTTGGTGGTTCAAGTTGAAGGGAGTTTGAAGGTTAAGGAAAGGGCTAAAGAGATACTCAAATTGCACTCTTTGGTTTGGAAGAGTTCTACATGTATTCCTCTTCCTTTGCTTTCATTGTATCCATGA 1218 0.4089 MDDIEVPTPFLCPISLQIMSEPVTVHTGITYDRENIERWLFSCKNTTCPVTKQSLVHTDLTPNHTLQRLIQSWCNQNKASLGTLITEHHVPTTDKAQILKLLSQASKFPDEKLNCLRRLRSIAFECESNKNCLESAGAIDFLASTMNTNKRRLQDSDMIIEAAIEVLFHLNPSGSQLKYLINNEEIQFLESLFHVLRIGNNQSRSYAIFLLKSAFDVAGSTQLSNVRTEFFVEIIRVIKDQISMQCSKSALKLLVELCSWGRNRVKAVEAGSVLVLIELLLAVCERRVCELILVALERLCGCAEGRAELLNHNAGLAIVSKKILRVSCAASDRGVKILSSICRYSATPKVLQEMLVVGAVSKLCLVVQVEGSLKVKERAKEILKLHSLVWKSSTCIPLPLLSLYP* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g2796 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 87 IPR013083 -
Aev04g2796 405 Gene3D - 96 326 IPR011989 -
Aev04g2796 405 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Aev04g2796 405 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Aev04g2796 405 PANTHER OS11G0573500 PROTEIN 1 405 - -
Aev04g2796 405 PANTHER WDSAM1 PROTEIN 1 405 IPR045185 GO:0061630
Aev04g2796 405 SUPERFAMILY RING/U-box 4 79 - -
Aev04g2796 405 CDD RING-Ubox_PUB 10 53 IPR045210 -
Aev04g2796 405 SUPERFAMILY ARM repeat 98 383 IPR016024 -
Aev04g2796 405 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g2796 Aev-Chr4 27780796 27782013 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g2796 2 405 U-box Gene Family AT2G35930 47.059 2.85e-125 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g2796 - - var:108340160 554.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev10g2125 10 21940656 21941891 Aev04g2796 04 27780796 27782013 PCT