Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g2736 ATGGAGCTTCGTTCTCGTCGTCAACTTTCCCAATCCACGGTTTCCGGGAAGGGGAAGCAACCCAGGGATACATCTATGGAAGTTGAAGCCAATAGTCAATTTGGCAATGATGCGGGTGAAGATGTTTATGGAGAATATTCAATTTCAGATTCCGATTTTGAAGATGAAGAGTTTGATGTTAACAATCTTCTCGACTTGAATCAAGAACCAACTTCAAGCGTGAGTGTTTCTGATGGAGGTTATGCTTCTGATTCATCAGACGGTAGCAAGCATGTATCTAAAAGGGGAAAGTCGCAGTCCAGTAAGAAAAGAAAAACAGTCAACTCACAAAATGGAGAGCCGAGTGGTGTTCAGATTCAGCAATCAGTTCCTGTCAATTTGACTAAGAACAAGAAGAAGAAAAAAGGGAGAAAGTCGAGGAAGGGAGATTCTGATACAGTATTGTTATGGGAAGCTTGGGAAGAGGAGCAAGAGAGATGGCTTGATGAGAATTTGTTGGAAGATTTTGACTTAGATCATCAAAATCAAGCATCAAATGAAACTGCCGAGCCATCCTCAGATCTGACTATGCCTTTGCTAAGGTACCAGAAGGAGTGGTTAGCCTGGGCTTTGAAACAGGAAAATTCTGCGACTAGAGGAGGAATCCTTGCAGATGAAATGGGGATGGGGAAGACTATTCAAGCAATTGCCCTTGTCCTTGCTAAACGTGAATTCCAACAAATGGTTTGTGAACTAGATGAACCTTGCCCTTCAGCAGGTTCGTCAAAAGTCCTGCCTGCTGTCAAAGGAACACTTGTCATTTGTCCCGTGGTTGCTGTCACCCAATGGGTTAGTGAGATTGATAGATTTACTTTGAAAGGAAGTACCAAGGTGTTGATTTATCATGGGGCAAAGAGGGGGAAGAATGTTGAGCAGTTCTCTGAGTATGATTTTGTAATAACAACATACTCTATTGTTGAGTCTGAGTACAGAAAATATGTGTTGCCTCCTAAGGAGAAGTGCGTATATTGTGGAAAATTATTTTACCCGAACAAGTTATCTTATCACCAGAAGTACTTTTGTGGGCCTGATGCTATCAGAACAGAAAAACAATCAAAGCAAATGAAGAAGAAGAGAAGGTATGACACAAAACAGAAGAAAAAAGAATTGGAGCAGGGTTTTACCAAGGAAAAGGAAGTGGAAATGGATGACTTAGATGCCATAGACAGGGATAAATCATTTCTACATGCTGTAAAGTGGCAGCGGATCATATTGGATGAGGCACACTATATCAAATCTAGACATTGTAACACTGCAAAAGCTGTTCTTGCTCTAGAATCTTCCTACAGATGGGCATTAAGTGGCACTCCCCTTCAGAACCGTGTTGGAGAGCTGTATTCTCTGGTACGGTTTCTGCAAATAGTTCCTTATTCGTATTACCTGTGCAAGGACTGTGACTGTAGAACACTTGATCATGGCTCCTCTAAACAATGCTCAAACTGTTGCCACAGTTCTGTTAGACATTTCTGTTGGTGGAACAAATATGTTGCCACACCCATTCAATCATATGGATATGGCGATTGTGGAAGAAGAGCTATGATATTGCTTAAGCACAAAATTTTAAAGAACATTGTTCTAAGGCGCACTAAAATAGGCAGGGCTGCAGATCTTGCACTTCCACCTAGAATTGTTTCATTGAGAAAAGATAGCCTGGATATAAAAGAGCAAGACTACTATGAATCATTATACAATGAAAGTCAGGCACAGTTTAATACATATGTTGAAGAAAATACTCTGATGAATAATTATGCTCACATATTTGACCTCCTCACACGACTCCGTCAGGCTGTTGATCATCCATATCTTGTGGTATATTCTCAAACTGCTGCATTAAGAAGTGGGAATTTGGCTACTAATGGTAATGTTGAACAAGTATGTGGTCTCTGTCATGAGCCAGTAGAAGATCCGGTGGTTACTGCTTGTGAGCATGTTTTTTGCAAGACTTGCTTGATAGACTTCTCTGCTTCCTTGGGACAAGCATCATGCCCCACATGCTCTAAATTACTTACTGTTGATTTAACTTCCAACAAGGATGCTGGGGTTCAGGGTAATAAAACGACAATTAAGGGTTTCAGATCATCCAGCATTTTAAACAGAATTCGGCTTGAGAACTTTCAGACAAGCACTAAAATTGAGGCATTGAGAGAAGAAATCAGATGTATGGTTGAAAGGGATGGTTCTGCCAAAGGGATCGTTTTTAGCCAATTCACGTCATTCTTGGATCTCATAAATTACTCCCTGCACAAGTCAGGTGTATCCTGTGTTCAATTGAATGGAAGCATGTCATTGGCTGCTCGGGATGCTGCCATTAAGAGGTTTACTGATGATCCAGACTGCAAAATTTTTCTCATGAGCTTGAAAGCCGGAGGAGTCGCTCTCAATTTGACAGTAGCATCACATGTTTTCCTGATGGACCCTTGGTGGAACCCTGCTGTGGAGCGTCAGGCACAAGACAGAATTCACCGGATAGGGCAATACAAACCAATCAGAATTGTGAGATTTGTTATTGAGAACACAATCGAGGAGAGGATTTTGAAGCTGCAAGAGAAGAAGGAACTAGTGTTTGAAGGGACTATAGGCGGCTCCGCTGAGGCTTTGGGGAAATTGACGGAGGCCGACTTGAAATTCCTGTTTGTTACCTAA 2682 0.4154 MELRSRRQLSQSTVSGKGKQPRDTSMEVEANSQFGNDAGEDVYGEYSISDSDFEDEEFDVNNLLDLNQEPTSSVSVSDGGYASDSSDGSKHVSKRGKSQSSKKRKTVNSQNGEPSGVQIQQSVPVNLTKNKKKKKGRKSRKGDSDTVLLWEAWEEEQERWLDENLLEDFDLDHQNQASNETAEPSSDLTMPLLRYQKEWLAWALKQENSATRGGILADEMGMGKTIQAIALVLAKREFQQMVCELDEPCPSAGSSKVLPAVKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLIYHGAKRGKNVEQFSEYDFVITTYSIVESEYRKYVLPPKEKCVYCGKLFYPNKLSYHQKYFCGPDAIRTEKQSKQMKKKRRYDTKQKKKELEQGFTKEKEVEMDDLDAIDRDKSFLHAVKWQRIILDEAHYIKSRHCNTAKAVLALESSYRWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCRTLDHGSSKQCSNCCHSSVRHFCWWNKYVATPIQSYGYGDCGRRAMILLKHKILKNIVLRRTKIGRAADLALPPRIVSLRKDSLDIKEQDYYESLYNESQAQFNTYVEENTLMNNYAHIFDLLTRLRQAVDHPYLVVYSQTAALRSGNLATNGNVEQVCGLCHEPVEDPVVTACEHVFCKTCLIDFSASLGQASCPTCSKLLTVDLTSNKDAGVQGNKTTIKGFRSSSILNRIRLENFQTSTKIEALREEIRCMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVSCVQLNGSMSLAARDAAIKRFTDDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTIGGSAEALGKLTEADLKFLFVT* 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g2736 893 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 730 890 - -
Aev04g2736 893 Pfam Helicase conserved C-terminal domain 723 837 IPR001650 -
Aev04g2736 893 SMART helicmild6 754 837 IPR001650 -
Aev04g2736 893 PANTHER - 730 890 - -
Aev04g2736 893 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 412 891 IPR027417 -
Aev04g2736 893 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 719 883 IPR001650 -
Aev04g2736 893 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 541 IPR027417 -
Aev04g2736 893 MobiDBLite consensus disorder prediction 1 141 - -
Aev04g2736 893 Pfam SNF2-related domain 206 616 IPR000330 GO:0005524|GO:0140658
Aev04g2736 893 MobiDBLite consensus disorder prediction 103 127 - -
Aev04g2736 893 CDD SF2_C_SNF 721 848 - -
Aev04g2736 893 MobiDBLite consensus disorder prediction 1 32 - -
Aev04g2736 893 MobiDBLite consensus disorder prediction 64 87 - -
Aev04g2736 893 MobiDBLite consensus disorder prediction 47 62 - -
Aev04g2736 893 Gene3D - 558 891 IPR027417 -
Aev04g2736 893 Gene3D - 151 337 IPR038718 -
Aev04g2736 893 Gene3D - 350 557 IPR038718 -
Aev04g2736 893 SUPERFAMILY RING/U-box 635 683 - -
Aev04g2736 893 ProSiteProfiles Zinc finger RING-type profile. 639 679 IPR001841 -
Aev04g2736 893 SMART ultradead3 188 486 IPR014001 -
Aev04g2736 893 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 629 706 IPR013083 -
Aev04g2736 893 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 403 728 - -
Aev04g2736 893 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 130 379 - -
Aev04g2736 893 CDD DEXDc_SHPRH-like 192 541 - -
Aev04g2736 893 Pfam Zinc finger, C3HC4 type (RING finger) 639 678 IPR018957 GO:0046872
Aev04g2736 893 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 205 468 IPR014001 -
Aev04g2736 893 SMART ring_2 639 678 IPR001841 -
Aev04g2736 893 PANTHER - 403 728 - -
Aev04g2736 893 PANTHER - 130 379 - -
Aev04g2736 893 ProSitePatterns Zinc finger RING-type signature. 654 663 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g2736 Aev-Chr4 27178355 27186159 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g2736 66 893 RAD5 or RAD16-like Gene Family AT1G05120 64.038 0.0 1107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aev04g2736 SNF2_N 4.4e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g2736 K15083 - gmx:100786366 1332.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev04g2736 04 27178355 27186159 Aev04g2736 04 27178355 27186159 ECH