Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g2642 ATGTTTCTGAAATCTCGTATCAATTCAGCTACTTCCATATTGCCTATTACACTGCCCACCTTTAGCATAGCGCTCTCTATAGTGATTCTCATCACTCTCTCACAAATCCCCAAACCTATCAAAAAGAAAAACAAAAGACAATTCTTTTTCTCCCTTCTCAATCAACTGTTGAAAGCACTCATGGTTGAGTCATTGTTCCGGCTTCGCAGTGGAATCGGAGCGACAAGGAATGGATCGGAACAAAGTCGTTGGGCCAACATGCCACAAGAATTGCTGAGAGAGGTGCTCGCGAGAGTGGAAGCGTCTGAGGCAACGTGGCCGCAGCGAAAGAGCGTGGTGGCTTGTGGTGGAGTGTGCCGCGCTTGGAGGCACGCCGCAAACGACGTCGCTATACCTCCTGCAGTTTCTTCCAGGATAACCTTCCCCATCTCTCTCAAACAGCCTGGCCCAAGGGAGCATCTATTCCAGTGCTTCATTAAGCGCAACCGGAACGCCCAAACATATCATTTGTTTCTCAGTTTAAATAATGGCGCAATAGTTGCTGATGGGAAGTTCCTTCTGGCTGCACGAAAGTATAGACGCCCCACTTGCACGGATTATGTTATCTCTATAAACTCTGATGATGCATCAAAGGGAAGCAACGCCTGTGTTGGGAAACTGAGATCAAATTTTCTGGGAACAAAGTTCACAGTCTATGATGATCAACTTCCTCATACAAGAGGAGCAAATATCACAAAAAGTCGCTCCAATAGGCTGATGAATCTTAAACGAGTTTCGCCCAAGGCCCCTACGGGCAGCTATCCTGTAGCCCACATCTCGTATGAATTGAATGTGCTAGGCTCAAGTTGCTCCGTTCTGCCACCGCTGCAGCTAAAGCTTCAGTTTTTTTTGTTCTGCTTCTGGTTCAATTTTGCTTATGCTTCCGGTTCGCGTTCTGATTTTGGTTCTCATACTGCTTCTGCTTATAGATCTGGTTCGCGTTTTGCTTCTGGTCTGCTCCAGCTTATTGGTTCTACTTGTGCTTCCTAG 1029 0.4665 MFLKSRINSATSILPITLPTFSIALSIVILITLSQIPKPIKKKNKRQFFFSLLNQLLKALMVESLFRLRSGIGATRNGSEQSRWANMPQELLREVLARVEASEATWPQRKSVVACGGVCRAWRHAANDVAIPPAVSSRITFPISLKQPGPREHLFQCFIKRNRNAQTYHLFLSLNNGAIVADGKFLLAARKYRRPTCTDYVISINSDDASKGSNACVGKLRSNFLGTKFTVYDDQLPHTRGANITKSRSNRLMNLKRVSPKAPTGSYPVAHISYELNVLGSSCSVLPPLQLKLQFFLFCFWFNFAYASGSRSDFGSHTASAYRSGSRFASGLLQLIGSTCAS* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g2642 342 Pfam F-box domain 84 128 IPR001810 GO:0005515
Aev04g2642 342 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 75 282 - -
Aev04g2642 342 SUPERFAMILY Tubby C-terminal domain-like 133 282 IPR025659 -
Aev04g2642 342 SUPERFAMILY F-box domain 77 128 IPR036047 GO:0005515
Aev04g2642 342 PANTHER TUBBY-RELATED 75 282 - -
Aev04g2642 342 Pfam Tub family 145 281 IPR000007 -
Aev04g2642 342 PRINTS Tubby superfamily signature 266 293 IPR000007 -
Aev04g2642 342 PRINTS Tubby superfamily signature 200 216 IPR000007 -
Aev04g2642 342 PRINTS Tubby superfamily signature 216 240 IPR000007 -
Aev04g2642 342 Gene3D - 84 131 - -
Aev04g2642 342 Gene3D Tubby Protein; Chain A 142 285 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g2642 Aev-Chr4 26205402 26212922 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g2642 66 281 TUB Transcription Factor Family AT2G47900 59.389 1.26e-92 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Aev04g2642 Tub 2.2e-42 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g2642 K19600 - gmx:100778346 310.842