Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g2641 ATGCTTTGTGCCATTTCTGTCATTCCTGCCTCTGCAATTGAACCAGGAGGAGTAGTAGCCCCTGCACAGAAAGACTCTTTAACTAATAACATAGAAATATTTCCCAAGTTCCCAATTTTTCGATCAAAATCAACTAGCTTGGTGAACTTTAGATCTGGGCTCATGGGCGATAAACAATACGAAATGCTAGTGTTGAAAAACAAGGCTCCAACATGGCATGAGCAACTGCAGTGTTGGTGCTTAAACTTCAATGGTCGAGTGACTATTGCATCTGTTAAAAATTTTCAGCTAGCTGCTTCGCCAAAAAATGAGCTTGGAGCCGAAGAAGATAAGGTCATCCTTCAATTTGGAAAAGTAGATGAGAATTTGTTTACAATGGATTATAGTTATCCTATCTCGGCGTTCCAGGCTTTCGCTATCTGTCTCAGCAGCTTTGACACCAAGATTGCTTGCGAATGA 459 0.4096 MLCAISVIPASAIEPGGVVAPAQKDSLTNNIEIFPKFPIFRSKSTSLVNFRSGLMGDKQYEMLVLKNKAPTWHEQLQCWCLNFNGRVTIASVKNFQLAASPKNELGAEEDKVILQFGKVDENLFTMDYSYPISAFQAFAICLSSFDTKIACE* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g2641 152 Gene3D Tubby Protein; Chain A 21 152 IPR025659 -
Aev04g2641 152 SUPERFAMILY Tubby C-terminal domain-like 50 152 IPR025659 -
Aev04g2641 152 PRINTS Tubby superfamily signature 109 128 IPR000007 -
Aev04g2641 152 PRINTS Tubby superfamily signature 83 99 IPR000007 -
Aev04g2641 152 PRINTS Tubby superfamily signature 130 152 IPR000007 -
Aev04g2641 152 PRINTS Tubby superfamily signature 65 82 IPR000007 -
Aev04g2641 152 ProSitePatterns Tub family signature 2. 137 152 IPR018066 -
Aev04g2641 152 Pfam Tub family 1 147 IPR000007 -
Aev04g2641 152 PANTHER TUBBY-RELATED 1 152 - -
Aev04g2641 152 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 1 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g2641 Aev-Chr4 26201575 26202033 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g2641 1 152 TUB Transcription Factor Family AT2G47900 64.935 6.68e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Aev04g2641 Tub 1.1e-49 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g2641 K19600 - gmx:100778346 212.231