Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g2613 ATGGATCAGCTGGGAAGTCAACCTTCTTCCTCAACTAACAAGGTTGAAAGAAGGCTCATAGAGAAAAACAGAAGGAACCAGATGAAGATACTCTACACCAAACTCAATTCTCTCCTCCCTAACTATAACCCCAAGGAAGCGATACCACTGCCAGATCAAGTGGATGAGGCCATCAAGTACATAAAGAGGCTAGAGCAAAAGGTGAAGATGGGTGAGGAGAAGAAAGAGGGCTTATTATTATTAGGAAGGAAGAGATCGCGTGGTTGCAGCAGCAGCAGCATCTCCTCTGGTACTGCTTTGATGGGAGGGTGCCCGAAACCGCCACGACTCGAGATTCATGAAATGGGTTCTTGTCTTGAACTTGTTATGACTTGTCGGTTAGATAGCCACTTCATTTTCTATGAAATCATTCGAATACTGCATGAAGAGAATATAGATGTCAAGAGTCTCAATTCAACCCTGGTTGGAGATTCAATGTTCCATGTTGTGCATGCAGAGATTCCGCAGTGTTTGCTTCAATTCGGGGCGAGCAGAGTAAGTGAGAGATTGAAAAGGTTTGTGGATGGATCAGCAAGTGATATTGAAATACAGCCCGAGCTGTGGGATTTTGACATTGATACTGATATGTGGGGTTTCTAG 639 0.4413 MDQLGSQPSSSTNKVERRLIEKNRRNQMKILYTKLNSLLPNYNPKEAIPLPDQVDEAIKYIKRLEQKVKMGEEKKEGLLLLGRKRSRGCSSSSISSGTALMGGCPKPPRLEIHEMGSCLELVMTCRLDSHFIFYEIIRILHEENIDVKSLNSTLVGDSMFHVVHAEIPQCLLQFGASRVSERLKRFVDGSASDIEIQPELWDFDIDTDMWGF* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g2613 212 Coils Coil 54 81 - -
Aev04g2613 212 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 11 78 IPR036638 GO:0046983
Aev04g2613 212 Gene3D - 5 88 IPR036638 GO:0046983
Aev04g2613 212 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 9 194 IPR015660 GO:0003700|GO:0006357
Aev04g2613 212 Pfam Helix-loop-helix DNA-binding domain 14 65 IPR011598 GO:0046983
Aev04g2613 212 SMART finulus 18 70 IPR011598 GO:0046983
Aev04g2613 212 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 9 194 - -
Aev04g2613 212 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 12 64 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g2613 Aev-Chr4 25827123 25830740 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g2613 7 189 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 35.979 3.72e-30 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aev04g2613 HLH 2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g2613 - - gmx:100817883 270.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev04g2613 04 25827123 25830740 Aev04g2613 04 25827123 25830740 ECH
Aev10g2203 10 22377064 22378419 Aev04g2613 04 25827123 25830740 PCT