Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g2588 ATGGCCTTGAATCAGTACTTGGAGGAGGCTATGCCTCGAACCGATTCCTCTGAAGATATACTATCCTTACAAAAGCGGAAATCTTCCACTGATGCCACTGCAGATTCTGAAAGGAATGCCACCGGTAGCTTCGACTGCAACATCTGCCTTGAGTGTGTCCAAGATCCGGTAGTCACTCTCTGTGGTCACCTCTACTGCTGGCCCTGCATTTACAAATGGCTTCATTTTCAAAGCATCTCTTCCAAAGAGGTAGAGCTGCAGAAGCCACAATGTCCAGTATGCAAATCAGAAGTTTCTCAATCCTCCCTCATTCCACTGTATGGCCGCGGCCAAGCTACAACACCCTCCGAAAAAAAGGCGCATCAACTAGGGGTCGCCATACCGAGAAGACCCCTCGGCCCAAGATCATATAATGCTACAGCTGTTTCAGAATCTCCTCAAACTTACCATCATCATCAATTCAACTCAATTCCAAGCAGCTACACTTCACCAATGCTTAGCACAAGTGGTCCACTAGATAGAACTTTTGGAGACTTTGGTGAGATGATATATGCAAGGGTCTTTGGTAACCATATGACAAACATATACACATATTCCAATTCCTCCAACCTCTCAGGGAATAATAGGATCAGGAGGCATTTGATGCATGCTGATAAGTCACTCAGTAGAATATGTGTTTTCCTCCTCTGCTGCTTAATTGTGTGTCTCCTCTTATTCTGA 720 0.4514 MALNQYLEEAMPRTDSSEDILSLQKRKSSTDATADSERNATGSFDCNICLECVQDPVVTLCGHLYCWPCIYKWLHFQSISSKEVELQKPQCPVCKSEVSQSSLIPLYGRGQATTPSEKKAHQLGVAIPRRPLGPRSYNATAVSESPQTYHHHQFNSIPSSYTSPMLSTSGPLDRTFGDFGEMIYARVFGNHMTNIYTYSNSSNLSGNNRIRRHLMHADKSLSRICVFLLCCLIVCLLLF* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g2588 239 MobiDBLite consensus disorder prediction 12 33 - -
Aev04g2588 239 SUPERFAMILY RING/U-box 37 101 - -
Aev04g2588 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 127 IPR013083 -
Aev04g2588 239 ProSiteProfiles Zinc finger RING-type profile. 46 95 IPR001841 -
Aev04g2588 239 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 3 239 - -
Aev04g2588 239 SMART ring_2 46 94 IPR001841 -
Aev04g2588 239 MobiDBLite consensus disorder prediction 1 38 - -
Aev04g2588 239 CDD RING-HC_AtRMA_like 44 96 - -
Aev04g2588 239 Pfam Zinc finger, C3HC4 type (RING finger) 46 94 IPR018957 GO:0046872
Aev04g2588 239 ProSitePatterns Zinc finger RING-type signature. 61 70 IPR017907 -
Aev04g2588 239 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 239 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g2588 Aev-Chr4 25622754 25623473 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g2588 39 239 C3H Transcription Factor Family AT4G28270 41.262 4.55e-48 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g2588 K10666 - gmx:100807729 295.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev04g2588 04 25622754 25623473 Aev04g2588 04 25622754 25623473 ECH