LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev04g2576	ATGGCCGCTACAAAGAACAGTGGCAAATCAAGCAAGGGTGTTGATAACAATGAAAGGGTAATTGGTGAAAGTGGAAACCAGGATTGGGAGATTAATAATAATAAGGGGAAATGTGTTGATTTCAGCTCACAGCAGAGGCGGCAATGGAAGCCAGTTTTTGATGAAGCTTCCATGTCAAATAGGCCTCTCAAGAAGATTCGAAGCCCTGAACGCCAAACCCAAAACCAATCCTCATCTTCTACGCTTTCTCTGCAACCTCTTCCTCCTCCTTCATCTTCTGCCTCTTACCCTTCAAGAATAGTTTTTCCTTTTGCATTTGAAGGGTCTCATACTCATCAATTCCCACACCAACTTGGAACAACAACAACAAAAACAAACTTGCCTCTTTTTCATCCTCCACCTGTTCAGCCAACACAACAACAATTTCAGCAGAACATGATATCTTTTGGGTCCCAGCAGAATCAGAATCTTCAGTATTGGAGTGATACACTGAATCTGAGTCCAAGAGGGAGAATGAATATGATGATGAACAGAGTAGGTCCTGATGGAAGGCCCCCAATACAGCCTTTGAATGCTACCAAGCTCTATAGAGGAGTGAGGCAGCGACATTGGGGGAAATGGGTCGCTGAGATTCGCCTCCCTCGCAATAGGACTCGTCTCTGGCTAGGAACATTCGACACTGCAGAGGATGCTGCTATGGCCTATGACCGCGAGGCCTTCAAGCTGAGAGGAGAGAATGCTAGGCTCAATTTCCCTGAGCTCTTCCTTAACAAGGATAAAGCAGCACCAACTTCTGCTTCTTCTCCTAATGAAGCTACTTCAGCATCAGCATCAAGCCAGAACACAAAGGAACCCGAACGGGAGCGGTTGAAACTCATGGAGCCAATTCAAGAAGACAGCAATATGCAGCAGGGACTGAACAATGAGAGCAGGCCAATGCCGGTGCCGGTTTCGGAGAATTCGGATAATGATTCAAGGATGAGTGATGAAGTTCAGGTGGCTGCTGCTGGGGAAGGCTTTTCGCAGTCTCAGGAATTGGTTTGGGGTGAAATGGCTGCTTGGTTCAATGCGATTCCTGCAGGTTGGGGACCTGGTAGCCCTATGTGGGATGATTTGGATGCTAGCAATAATCTTATTTTCCAGTCACAGCTTCCTTTTCTGAATCCAAATCAGCATGAGTTCAATGATGCTGATCCTCAGAGAGATGAAGATAACACTAACACAGAACCAGGTTCTTCCTCTTCCTCTGTTCCTATTAGGCCCTTCTTCTCGAAGGATCAAGATTGA	1287	0.4615	MAATKNSGKSSKGVDNNERVIGESGNQDWEINNNKGKCVDFSSQQRRQWKPVFDEASMSNRPLKKIRSPERQTQNQSSSSTLSLQPLPPPSSSASYPSRIVFPFAFEGSHTHQFPHQLGTTTTKTNLPLFHPPPVQPTQQQFQQNMISFGSQQNQNLQYWSDTLNLSPRGRMNMMMNRVGPDGRPPIQPLNATKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENARLNFPELFLNKDKAAPTSASSPNEATSASASSQNTKEPERERLKLMEPIQEDSNMQQGLNNESRPMPVPVSENSDNDSRMSDEVQVAAAGEGFSQSQELVWGEMAAWFNAIPAGWGPGSPMWDDLDASNNLIFQSQLPFLNPNQHEFNDADPQRDEDNTNTEPGSSSSSVPIRPFFSKDQD*	429

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev04g2576	428	MobiDBLite	consensus disorder prediction	406	422	-	-
	Aev04g2576	428	MobiDBLite	consensus disorder prediction	387	428	-	-
	Aev04g2576	428	Gene3D	AP2/ERF domain	195	253	IPR036955	GO:0003700\|GO:0006355
	Aev04g2576	428	ProSiteProfiles	AP2/ERF domain profile.	195	252	IPR001471	GO:0003700\|GO:0006355
	Aev04g2576	428	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053	1	425	-	-
	Aev04g2576	428	MobiDBLite	consensus disorder prediction	297	322	-	-
	Aev04g2576	428	MobiDBLite	consensus disorder prediction	261	281	-	-
	Aev04g2576	428	MobiDBLite	consensus disorder prediction	261	330	-	-
	Aev04g2576	428	PRINTS	Ethylene responsive element binding protein signature	196	207	IPR001471	GO:0003700\|GO:0006355
	Aev04g2576	428	PRINTS	Ethylene responsive element binding protein signature	218	234	IPR001471	GO:0003700\|GO:0006355
	Aev04g2576	428	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061	1	425	-	-
	Aev04g2576	428	SUPERFAMILY	DNA-binding domain	195	253	IPR016177	GO:0003677
	Aev04g2576	428	SMART	rav1_2	195	258	IPR001471	GO:0003700\|GO:0006355
	Aev04g2576	428	MobiDBLite	consensus disorder prediction	1	95	-	-
	Aev04g2576	428	Pfam	AP2 domain	196	244	IPR001471	GO:0003700\|GO:0006355
	Aev04g2576	428	MobiDBLite	consensus disorder prediction	69	95	-	-
	Aev04g2576	428	MobiDBLite	consensus disorder prediction	20	50	-	-
	Aev04g2576	428	CDD	AP2	194	254	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev04g2576	Aev-Chr4	25520246	25521702	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aev04g2576	1	371	AP2-EREBP Transcription Factor Family	AT2G20880	39.599	3.18e-62	202

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Aev04g2576		AP2	2.8e-13	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev04g2576	-		-	adu:107477889	462.225