Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g2510 ATGTCTAGGACGCTGGTGCAGCCGATAGGGCAGAAGAGGCTAACAAACGTGGCGGTTGTGCGTCTCAAGAAGCACGGCATGCGCTTCGAGATAGCCTGTTATCCTAACACCGTCCTTTCTTGGCGTTCCGGCGTGGAGAAGGACCTAGATGAAGTGTTGCAGTCACACACGGTTTATTCCAATGTTTCCAAAGGGGTTCTTGCCAAATCAAAGGATTTGATGGCTGCTTTTGGGACTGATGACCAGACTAAGATATGCTTAGAGATTTTGAAGAAAGGGGAGCTTCAGGTTGCTGGGAAAGAGAGGGAATCAATACTGTCGAGTCAGTTCAGGGACATTGCCACAATTGTGATGCAAAAGACTTACAATCCTGAGACTCAGCGCCCTTACACTATTAGCATGATTGAGCGCCTCATGAAGGAGATTCATTTCGCTGTTGATTCAAATAGCAGCTCCAAGAAGCAGGCTCTGGAGTTGATTCAGGAGCTTCAAAAGCACTTCCCTATAAAACGATGTCCATTAAGAATACGGATTGCTGCTCCTGAGCAGGAAATGCCAAACCTTATGGAAAAGCTGAATGAGTGGAATGCTACCATAAATTCTAAAGAAGGATCTGCTGGTCAGCTATCTGTTATTTTTGAATTGGAACCTGGTCTATACAAGGCTTGTCATGACTTTGTTATGAATAGCATGGACGGAAAATTTGAGGTTCTTGCACACTCTCTTTATGCTGATGGGGATACTGGGTTTGAGCAATACAATGATTATGAGGATATGCCTGCACCGTTGCCCAGAGAAACTCGTGAATCTGTGCTTGAACTGAACGATAAACTTCAAAAACAGACGATTTCATCATCGAGTAAGCCTGCCGAGGGGCACAAGTGCAGCACGTGTAACGTTTCTTTTGAAGACGCTAAGCTTTACAGGGAACACCACAAGAGCGAGTGGCACAAGCACAATTTGAAACGTAAGACGAGGCAGCTTCCACCTCTTACTGAGGAGGAATGCATGGCCGATTTGGAATTGGGTGACTCAAAATCAGATTTGAAGGATTATTCATTTTGA 1065 0.4507 MSRTLVQPIGQKRLTNVAVVRLKKHGMRFEIACYPNTVLSWRSGVEKDLDEVLQSHTVYSNVSKGVLAKSKDLMAAFGTDDQTKICLEILKKGELQVAGKERESILSSQFRDIATIVMQKTYNPETQRPYTISMIERLMKEIHFAVDSNSSSKKQALELIQELQKHFPIKRCPLRIRIAAPEQEMPNLMEKLNEWNATINSKEGSAGQLSVIFELEPGLYKACHDFVMNSMDGKFEVLAHSLYADGDTGFEQYNDYEDMPAPLPRETRESVLELNDKLQKQTISSSSKPAEGHKCSTCNVSFEDAKLYREHHKSEWHKHNLKRKTRQLPPLTEEECMADLELGDSKSDLKDYSF* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g2510 354 ProSitePatterns Zinc finger C2H2 type domain signature. 295 317 IPR013087 -
Aev04g2510 354 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Aev04g2510 354 TIGRFAM RNA_SBDS: rRNA metabolism protein, SBDS family 13 227 IPR002140 GO:0042256
Aev04g2510 354 PANTHER BNAANNG06530D PROTEIN 1 354 - -
Aev04g2510 354 SUPERFAMILY beta-beta-alpha zinc fingers 283 339 IPR036236 -
Aev04g2510 354 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 354 IPR039100 -
Aev04g2510 354 Gene3D - 174 251 - -
Aev04g2510 354 Gene3D - 1 96 IPR036786 -
Aev04g2510 354 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Aev04g2510 354 Gene3D Classic Zinc Finger 280 342 - -
Aev04g2510 354 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
Aev04g2510 354 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254
Aev04g2510 354 Gene3D - 100 172 IPR037188 -
Aev04g2510 354 Pfam SBDS protein, C-terminal domain 175 238 IPR046928 -
Aev04g2510 354 SUPERFAMILY FYSH domain 13 96 IPR036786 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g2510 27 354 C2H2 Transcription Factor Family AT1G43860 59.130 1.67e-144 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aev04g2510 SBDS_C 1.4e-29 CL0437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g2510 K14574 - gmx:100797497 621.698