Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g2478 ATGGGGAACAATAGCATGTTTCGTTATGCAGATGGTGTTGACAAGTTGCTGATGTTGTTTGGGAGCCTTGGGAGCCTTGGAGATGGTTTGCAGAACCCTCTCATGATGTACATTCTTAGTGATGTAATCAACGCCTTTGCTGATAAGGATAGCAAGTTGACAAAGAGTGATGTGAACAAGTACGCATTGAGACTTTTATGTGTTGCAATTGGAGTTGGAATTTCAGCTTTTATTGAAGGAATATGTTGGACAAGAACTGCTGAGAGACAGGTTTCTAGAATAAGAACAAAATTCCTAAAATCAGTCCTAAGACAAGAAGTTGGCTTCTTTGACACACAATCTGCTGGTTCTTCAACAACCTACCATGTTGTCTCACTCATCTCCGATGCCAATGCAATCCAAGTTGCCATGGCTGAGAAGATACCAGACTGCTTGACCTATATGTCAACTTTCTTATTCTGCCACATCTTTGCTTTTATGCTTTCATGGAGACTAGCACTGGCAGCCATACCATTCTCCCTCATGTTCATCGTTCCAGCACTTATATTTGGGAAGATCATGTTGGATGTGACGATGAAAATGATCGAGTCTTATGGAGTTGCTGGTGGAGTTGCAGAGCAAGCAATATCTTCAATAAGATCTGTTTATTCTTATGTTGGGGAGAATCAAACACTAAACAAATTTAGCAGTGCACTTGAGAAAACTATGGAACTTGGAGTAAAGCTTGGTTTTGCGAAAGGGTTGATGTTAGGGAGCATGGGAGTTATATATATAAGTTGGGGCTTTCAGGCTTGGGTTGGAAGCAATCTCATCACTGAAAAAGGAGAAAAGGGTGGCCATGTATTTGTAGCTGGTTTCAATGTCCTCATGGGAGGGCTGAGCATTTTGAGTGCACTTCCAAATTTAACTGCTATTACAGAAGCAACTACGGCAGTGACTCGTCTTTTTGAAATGATTGATAGGGTGCCAACTATAGATTCGGATGACAAAAAGGGAAAGGCTTTATCATATGTGAGAGGAGAAATTGAGTTTAAGGATATCTACTTCAGTTATCCATCTAGGCCAGATACACCAATCTTGCAGGGACTAAATCTCACTGTTCCAGCAAGCAAGAGAGTAGGCCTTGTTGGGAGTAGTGGTTCAGGAAAATCCACCATCATTGCACTGCTTGAGAGGTTTTATGACCCTATTGAGGGAGAAATACTCTTGGATGGCCACAACATTAGTAGACTTCAATTGAAATGGCTGAGATCTCAACTTGGCCTAGTAAATCAAGAGCCTATTCTCTTTGCCACATCCATAAAAGAGAATATATTGTTTGGAAAACAAGGGGCTTCAATGGAAAGTGTAATAAGTGCAGCTAAAGCATCAAATGCCCATGATTTCATAGTCCAGTTGCCAGATGGTTATGAAACTCAAGTAGGACAGTTTGGGTGTCAATTGTCTGGTGGGCAGAAGCAACGTATTGCCATAGCGAGAGCTTTAATTAGAGATCCAAAGGTTTTATTGCTTGATGAAGCTACCAGTGCACTGGATGCACAATCTGAAAGGGTGGTGCAGGCTGCAATTGATCAAGCCTCAAAAGGAAGGACAACAATCATCATCGCTCACCGCCTGTCGACGATACAGTCTGCAGACCTTATTGTTGTCCTTCAAGCAGGGAGAGTAATTGAATCAGGTACTCATAATGAGCTCGTGGAAATAAATGGTGGACATGGCGGGGAGTATGCTCGTATGGTAGAGTTGCAGCAAGTAACAACTCAAAATGATGAATCCAAGCCTTCCAATCATCAAATGGATGGAAGGAGCTTCCACAGGGGAAGCACTACTCCTCAAAGTCCCTCAGTAAGTTTCAGATCAAGCACACATGGCACTCCAATGTTATATCCCTTAAGCCAGGGGTTTTCCATGGCCACTCCTTACTCCTACTCCATCCAATATGATCCAGATGATGATAGTTATGAAGGTAATTACTTAAAAAGATCACACTATCCTTCTCCTTCGCAATGGCGTTTGATGAAAATGATTGGGCCTGATTGGGGAATAGCGGTTCTTGGAATCTTGGGAGCATTAGGCTCAGGAGCAGTACAGCCAATAAATGCATACTATGTGGGATTGTTAATATCAGATTACTTTGACATTGATCATATCAAGTCTAAAACTAGGGGCCTAGCCCTCACTTTCTTAGGAATTGGCATTTTTAACTTGGTCACAAGTATTGTCCAACACTATAATTTTGCAGTTATGGGAGAAAGGTTGACTAAAAGAATAAGACAGAAGATGTTAGAGAAGTTGATGACTTTTGAGATAGGATGGTTTGATGATGAAGAGAACACAAGTGCTGCCATTTGTGCAAGATTGTCTTCTGAAGCTAACTTAGTCCGGTCCCTTGTCGGTGACCGGATGTCGTTGTTGGCCCAAGCAATCTTTGGTTCTGTCTTTGCTTATACTCTAGGACTTGTGCTTACATGGAGGCTTTCTCTTGTGTTGATTGTAGTGCAGCCAGTAGTGATTGGAAGTTTTTATTCAAGAAGTGTTTTGATGAAGAGTATGGCAGAGAAGGCGCGAAAAGTGCAAAGGGAAGGAAGCCAACTTGCAAGTGAAGCTGTCATAAACCATAGAACCATAAATGCCTTCAATTCTCAGAAGAGAATGTTGGAACTCTTCAAATCCACAATGGTAGGCCCTAAAAAGAAGAGTATAAGGCAGTCATGGATTTCAGGTTTGGGTCTTTTCAGCTCCCAATTTTTCAACACTGCATCAACAGCATTAGCTTACTGGTATGGTGGGAGGCTGCTGATAGATGGAGAAATTGAACCAAAGCATCTTTTCCAAGCATTTCTGATATTGCTCTTCACTGCATACATAATTGCAGAAGCTGGAAGTATGACTTCTGATATATCTAAAGGAAGCATAGCAGTTGGATCAGTTTTCGCTATCTTGGACAGGAAAAGTGAGATTGATCCTGAGTCCTCATGGGGAGGAGACAAGAGAAGGAAGATAAGGGGTAGAGTGGAGCTTAAGAGTGTGTTCTTTGCATATCCAACTAGGCCTGATCAGATGATATTTAAGGGTCTGTCTCTTAAAGTTGAAGCTGGAAGAACAATGGCAATAGTGGGGCATAGTGGTAGTGGTAAATCCACTATTATTGGTCTTATTGAAAGGTTTTATGATCCTCTTAAGGGATTGGTATGCATAGATGAACAGGACATCAAGTCCTACAATTTGAGAATGCTGAGGTCACAGGTCGCATTGGTCAGTCAAGAGCCAACTCTTTTTGCTGGAACCATCAGGGAAAACATTGCCTTTGGGAAAGAAGAGGCAACTGAATCTGAGATAAGAAGGGCTGCAGCTCTGGCTAATGCTCATGAATTCATAAGTGGAATGAAAGATGGGTATGACACATACTGTGGAGAAAGAGGAGTTCAGCTATCAGGTGGTCAGAAACAGAGAATTGCCTTAGCAAGGGCCGTATTGAAGAATCCATCAATTCTGCTTCTTGATGAGGCTACAAGTGCACTTGACAGTGTGTCAGAGAACTTGGTCCAAGAAGCACTTGAGAAGATGATGGTTGGAAGAACATGCATTGTTGTGGCTCATTCCCTATCTACAATACAAAGGTCCAATTCCATTGCTGTGATTAAGAATGGGAAAGTTGTAGAGCAAGGTTCACATAACGAATTACTTTCCCTTCATGGAGTTTACTATTCTCTTACTAAACTTCAAAATTTCAGCTCCACTAGATAA 3747 0.4174 MGNNSMFRYADGVDKLLMLFGSLGSLGDGLQNPLMMYILSDVINAFADKDSKLTKSDVNKYALRLLCVAIGVGISAFIEGICWTRTAERQVSRIRTKFLKSVLRQEVGFFDTQSAGSSTTYHVVSLISDANAIQVAMAEKIPDCLTYMSTFLFCHIFAFMLSWRLALAAIPFSLMFIVPALIFGKIMLDVTMKMIESYGVAGGVAEQAISSIRSVYSYVGENQTLNKFSSALEKTMELGVKLGFAKGLMLGSMGVIYISWGFQAWVGSNLITEKGEKGGHVFVAGFNVLMGGLSILSALPNLTAITEATTAVTRLFEMIDRVPTIDSDDKKGKALSYVRGEIEFKDIYFSYPSRPDTPILQGLNLTVPASKRVGLVGSSGSGKSTIIALLERFYDPIEGEILLDGHNISRLQLKWLRSQLGLVNQEPILFATSIKENILFGKQGASMESVISAAKASNAHDFIVQLPDGYETQVGQFGCQLSGGQKQRIAIARALIRDPKVLLLDEATSALDAQSERVVQAAIDQASKGRTTIIIAHRLSTIQSADLIVVLQAGRVIESGTHNELVEINGGHGGEYARMVELQQVTTQNDESKPSNHQMDGRSFHRGSTTPQSPSVSFRSSTHGTPMLYPLSQGFSMATPYSYSIQYDPDDDSYEGNYLKRSHYPSPSQWRLMKMIGPDWGIAVLGILGALGSGAVQPINAYYVGLLISDYFDIDHIKSKTRGLALTFLGIGIFNLVTSIVQHYNFAVMGERLTKRIRQKMLEKLMTFEIGWFDDEENTSAAICARLSSEANLVRSLVGDRMSLLAQAIFGSVFAYTLGLVLTWRLSLVLIVVQPVVIGSFYSRSVLMKSMAEKARKVQREGSQLASEAVINHRTINAFNSQKRMLELFKSTMVGPKKKSIRQSWISGLGLFSSQFFNTASTALAYWYGGRLLIDGEIEPKHLFQAFLILLFTAYIIAEAGSMTSDISKGSIAVGSVFAILDRKSEIDPESSWGGDKRRKIRGRVELKSVFFAYPTRPDQMIFKGLSLKVEAGRTMAIVGHSGSGKSTIIGLIERFYDPLKGLVCIDEQDIKSYNLRMLRSQVALVSQEPTLFAGTIRENIAFGKEEATESEIRRAAALANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAVLKNPSILLLDEATSALDSVSENLVQEALEKMMVGRTCIVVAHSLSTIQRSNSIAVIKNGKVVEQGSHNELLSLHGVYYSLTKLQNFSSTR* 1249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g2478 1248 Gene3D ABC transporter type 1, transmembrane domain 652 992 IPR036640 GO:0005524|GO:0016021
Aev04g2478 1248 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 10 1243 - -
Aev04g2478 1248 Pfam ABC transporter 1024 1172 IPR003439 GO:0005524
Aev04g2478 1248 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 10 1243 IPR039421 -
Aev04g2478 1248 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1000 1242 IPR027417 -
Aev04g2478 1248 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 684 969 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aev04g2478 1248 CDD ABC_6TM_Pgp_ABCB1_D1_like 18 315 - -
Aev04g2478 1248 CDD ABC_MTABC3_MDL1_MDL2 342 583 - -
Aev04g2478 1248 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 342 578 IPR003439 GO:0005524
Aev04g2478 1248 SMART AAA_5 369 555 IPR003593 -
Aev04g2478 1248 SMART AAA_5 1032 1218 IPR003593 -
Aev04g2478 1248 Gene3D ABC transporter type 1, transmembrane domain 5 592 IPR036640 GO:0005524|GO:0016021
Aev04g2478 1248 ProSitePatterns ABC transporters family signature. 481 495 IPR017871 GO:0005524
Aev04g2478 1248 CDD ABC_MTABC3_MDL1_MDL2 1005 1242 - -
Aev04g2478 1248 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 19 307 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aev04g2478 1248 SUPERFAMILY ABC transporter transmembrane region 670 988 IPR036640 GO:0005524|GO:0016021
Aev04g2478 1248 MobiDBLite consensus disorder prediction 585 621 - -
Aev04g2478 1248 Pfam ABC transporter transmembrane region 23 292 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aev04g2478 1248 Pfam ABC transporter transmembrane region 685 954 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aev04g2478 1248 ProSitePatterns ABC transporters family signature. 1144 1158 IPR017871 GO:0005524
Aev04g2478 1248 Gene3D - 995 1247 IPR027417 -
Aev04g2478 1248 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1005 1241 IPR003439 GO:0005524
Aev04g2478 1248 Pfam ABC transporter 360 509 IPR003439 GO:0005524
Aev04g2478 1248 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 333 583 IPR027417 -
Aev04g2478 1248 CDD ABC_6TM_Pgp_ABCB1_D2_like 673 987 - -
Aev04g2478 1248 MobiDBLite consensus disorder prediction 601 621 - -
Aev04g2478 1248 Gene3D - 332 584 IPR027417 -
Aev04g2478 1248 SUPERFAMILY ABC transporter transmembrane region 7 326 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g2478 Aev-Chr4 24385393 24396641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g2478 6 1248 Calmodulin-binding Proteins AT2G36910 43.405 0.0 981
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g2478 K05658 - gmx:100788127 2059.65