Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g2417 ATGGCTATGGATCCCACTAAGAAACGCAAGCTAGATGAGAACGGCTTCTCCGCCGCTAACGATTCCGACAGCCATCTGATGCTCACTCCGGCGGACGCCCGCAAGATCATGGAACGCTTCACGCCTGACCAGCTCCTCAACATCCTCCAGGACGCTGCCGTACGACACGCCGACGTCCTTACCGCCGTGCGAGCCATCGCCGACCCTGACGTCTCGCAGCGCAAGCTCTTCATCCGTGGCCTCGGCTGGGACACCACCACCGATGGCCTCCGCAACCTCTTCTCCGCCTACGGGGATCTCGAGGAGGCCGTCGTGATCCTCGACAAGGCCACCGGCAAGTCGAAGGGATACGGTTTTGTCACCTTCTGCCACGTGGACGGCGCCCTCCTTGCCCTCCGCGAGCCCAGCAAACGCATCGACGGACGCGTTACCGTCACCCAGCTTGCGGCGGCGGGCAACTCAAGCGCCGGGACCAATGCTAAAGACGTGGCATTGCGGAAGATCTATGTCGCGAACGTGCCGCCGGACCTCCCCGCGGATAAGCTTCTCGCCCACTTCTCGCAATACGGGGAGATTGAGGAGGGGCCGTTGGGGTTTGACAAGCAGACCGGAAATTCGAAGGGTTTCGCACTTTTCGTGTACAAGTCCGCGGATGGGGCGCAGGCTGCGCTTATGGAACCGGTGAAGACAGTGGACGGGAGACAGCTGAATTGCAAGCTGGCGAGTACGGACGGGAAGCAAGGGAAACGTGTTGGTGCGGCGCCCATGGGCCATGATGGGATTCACGGTCATGGGAGTGCCCATGGTCACGGGGATGGAATGGGGGTGGCTCCATCGTCGGTGCCAGGTCAGTATGGGGGTCCAGTTGGTGGCTTGGGTTCATATGGTGGGTTTGCTGGTGGGATGCAGGGTCAGCCTCCGATGGGGAGTCATCCGCCGAATTCGTCAGTTGGCGGGTTGGGTTCCGGTGGGAACCAGGCCTTCCAGGCCCCGACCGGGATGGGCGGTGCTGGAGGGTACAGTTCTGGGATGGGAGGCCATTATAGCGGGTATGGTGGGTCTGGGTCCGCTGGATTTGGGGGAATTGGCAACGGTTCTGCTGCTGCAGCTGGTTTGGGAGGAGGTAGTTCTGGCGGTGCTGGTGGACTTGGTGGCTCTGCTGGTGCTGGTTCGATGGATAGATTGCCGGGTTCGGGTGGAATGCCCGGTGTTGGGTATCCTTGGAATGGACATTACAGTTTATCAGCTTCAGGATATCAGAATCAACATCACCCACCTTCTGGAGCGTCTCCTGTTCCAAGGGTTCCGCCTGGCTCAATGTATCCAAATGTGCCCCCTTACTACTGA 1347 0.6028 MAMDPTKKRKLDENGFSAANDSDSHLMLTPADARKIMERFTPDQLLNILQDAAVRHADVLTAVRAIADPDVSQRKLFIRGLGWDTTTDGLRNLFSAYGDLEEAVVILDKATGKSKGYGFVTFCHVDGALLALREPSKRIDGRVTVTQLAAAGNSSAGTNAKDVALRKIYVANVPPDLPADKLLAHFSQYGEIEEGPLGFDKQTGNSKGFALFVYKSADGAQAALMEPVKTVDGRQLNCKLASTDGKQGKRVGAAPMGHDGIHGHGSAHGHGDGMGVAPSSVPGQYGGPVGGLGSYGGFAGGMQGQPPMGSHPPNSSVGGLGSGGNQAFQAPTGMGGAGGYSSGMGGHYSGYGGSGSAGFGGIGNGSAAAAGLGGGSSGGAGGLGGSAGAGSMDRLPGSGGMPGVGYPWNGHYSLSASGYQNQHHPPSGASPVPRVPPGSMYPNVPPYY* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g2417 448 Gene3D - 50 157 IPR012677 -
Aev04g2417 448 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 76 143 IPR000504 GO:0003723
Aev04g2417 448 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 168 236 IPR000504 GO:0003723
Aev04g2417 448 CDD RRM_RBM24_RBM38_like 166 241 - -
Aev04g2417 448 MobiDBLite consensus disorder prediction 417 448 - -
Aev04g2417 448 MobiDBLite consensus disorder prediction 305 330 - -
Aev04g2417 448 PANTHER UBP1-ASSOCIATED PROTEIN 2C 3 408 - -
Aev04g2417 448 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 74 151 IPR000504 GO:0003723
Aev04g2417 448 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 166 243 IPR000504 GO:0003723
Aev04g2417 448 PANTHER GEO13361P1-RELATED 3 408 - -
Aev04g2417 448 MobiDBLite consensus disorder prediction 429 448 - -
Aev04g2417 448 Gene3D - 158 278 IPR012677 -
Aev04g2417 448 CDD RRM_RBM24_RBM38_like 74 149 - -
Aev04g2417 448 SUPERFAMILY RNA-binding domain, RBD 161 273 IPR035979 GO:0003676
Aev04g2417 448 SUPERFAMILY RNA-binding domain, RBD 67 149 IPR035979 GO:0003676
Aev04g2417 448 SMART rrm1_1 75 147 IPR000504 GO:0003723
Aev04g2417 448 SMART rrm1_1 167 239 IPR000504 GO:0003723
Aev04g2417 448 MobiDBLite consensus disorder prediction 308 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g2417 Aev-Chr4 23623101 23624447 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g2417 161 255 C2H2 Transcription Factor Family AT2G19380 38.542 3.60e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g2417 K12741 - gmx:100776220 492.656