Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g1938 ATGAAGGCTCCTTCCAATGGTTTCTTGCCTAATTCAGGCGAAGGAGAAAGGAAGACGATTAATTCTGAATTATGGCATGCTTGCGCGGGGCCTTTGGTTTCGTTGCCTCCTGTTGGAAGTTTGGTGGTTTACTTCCCTCAAGGACACAGTGAACAAGTTGCAGCATCTATGCAAAAGGAAGCAGACTTCATACCCAGTTATCCTAATCTTCCTTCCAAATTGATTTGCATGCTTCACAATGTTGCCCTGCATGCTGACCCCGAAACGGATGAGGTCTATGCTCAAATGACTCTTCAACCTGTAAATAAATATGATAAGGAAGCAATACTGGCATCAGACATGGGTCTCAAGCAAAACCAACAACCTACTGAATTCTTTTGCAAAACCCTTACAGCTAGTGACACGAGCACACACGGCGGATTTTCTGTGCCTCGTAGAGCAGCTGAGAAAATATTCCCACCTCTGGATTTTTCAATGCAACCTCCTGCTCAGGAAATTGTCGCCAAGGATTTGCACGATAATACATGGACATTTAGACACATTTACCGCGGGCAACCAAAGAGGCATCTATTGACTACTGGTTGGAGTGTCTTTGTTAGCACAAAAAGACTATTTGCTGGAGATTCTGTTCTTTTTATAAGAGATGAAAAACAGCAACTTCTTCTAGGTATAAAGCGCGCAAATAGACAGCAGCCAGCACTCTCTTCATCGGTAATATCCAGTGACAGCATGCACATTGGCATTCTTGCTGCTGCAGCTCATGCTGCTTCAAATAACAGCCCATTTACCATATTTTATAATCCAAGGGCTAGCCCCTCTGAATTTGTGATTCCATTGGCCAAGTATAATAAGGCCATGTACACTCAAGTTTCCCTTGGAATGAGATTTAGAATGATGTTTGAGACTGAGGAGTCGGGAGTACGCAGATATATGGGTACAATCACTGGTATCAGTGACTTGGACCCTGTCCGATGGAAAAATTCACAGTGGCGCAATCTTCAGGTTGGTTGGGATGAATCAACGGCTGGCGAGCGCCCAGGCAGAGTTTCGATCTGGGATATTGAACCAGTTGTGACTCCTTTCTACATTTGTCCACCTCCATTTTTCAGGCCCAAATTCCCAAAGCAACCAGGAATGCCAGAAGATGAGTCTGACATAGAAAATGCTTTTAAGAGAGCTATGCCATGGCTGGGAGAGGACCTCGGCATGAAGGATGCCTCGAGCTCAATCTTTCCTGGTTTGAGTTTAGTACAATGGATGAGCATGCAGCAGAATAATCAGTTCTCTGCTGCTCAATCTGGTTTTATCCCCCCATCCATGTTTTCATCTAATACCCTACATGGTAACCTTAACAGTGATAATTCATCCAAGATATTGAACTTTCAAGCCCCGGTCCTCTCTGCACCGAATCTTCAATTTAACAAACCTAACTTACCAAACCAAGTCAATCAATTGCAGCAGTCCTCGACATCATGGCCTCAGCAGCAGCAGCAGCAGCAGAAGCTGCAGTCATTGTTGCAATCGCCGATTAACCAGCTCCAGCAGCAGCAGAGACAACAGCAGCTGCCAGAGCCACAAAACCTGCCACAGCAACCGCAACAACAACCCCAACAGGCTCAACAGAGAGCACAACAGCTTCAACAACAGCAACAACCACAACAGTCGTGTCAACAAACCATTATGAATAACGGGGTAGTTACGTCTAACCAGATTCCAAATCAGTGTGTGCAACAACCGGTAAACTACTCTCAGCTTCAGGTTCAGCAACAGCAATTGATCTCCGGCAGTATGGCACCCCAACAAAGTATCCAACCAGCGGGCAAGAATACGATGCTAATGACATCCTTACCACAAGACTCCCAATTTCAGCAACAAATGGATCAGCAAGTTAGTCTCCTTCAGAGGCAGCAGCAGCAACATACACAATTGCAGCAATCTCCATTGCAGTTCTTGCAACAAAACGTATCACAAAGGGCACCACCGCAAACACAAGGGACTCAAATGTCACATCAAAACCCCTCAGAGCAACAAATACAGTTACAGTTGCTGCAGAAACTGCAACAGCAACAGCAACTTCTTACCACATCTACCCCACATCTGCAGTCTCAGCTTCTTCAGCAGCAAAATACTCATCAACCAAACCAACAATTACCGCAGCTGCCTCAATCGCAGCATCAACCTCAACAGCTTGTCAATAATGCATTCTCAATGGATAAATTTCTCAACAGCAACAACTTCTCTTCTTCAGCTCTGATGCAATCACAACAGCTTCCTGTGACCCAGCCCCAGAATACACAGAAATCACCTACAACTACCGGAGCTCCCTCTAGTCTTACCGATGTAGATGCACCATCATGCTCAACTTCACCATCTACTAATACCTGCCAGATATCTCCCCCAAACCTCCTGAAGAGAAATCAAGTACCTACTACATTAAGCGGGATATCCGTAGTTGAGCCGACTAATAATCTAATGCATGAGCTTCAGAGTAAGTCCGACATGCAGATCAAGCATGAATTGCCCGGTCTAAAAGGACCTGACCAGCTAAAGTATAAAGGGACAATCAGTGATCAGCTGGAAGCTTCTTCTTCTGGAACATCTTACTGTATTGATCCTGGTAACATCCATCAGAACTTCCAACTGCCTAACTTCTGCATGGATGGGGATGTGCAATCACATCCTAGGTCCAATCTACCATTTTCCTCGAATCTTGATGGACTAATACCAGATACCATGCTCTCGAGGGGCTATGACTCTTCGAAAGATCTCCAGAACTTGCTGTCTAATTACGGTGGTGCTCCAAGAGACATTGAAACTGAGCTGTCCACTGCTGCCATCAGTTCGCAGTCATTTGGGGTGCCAAACATGCCTTTTAAGCCTGGTTGCTCAAGTGATATTGCCATGAATGATGCTGGAGTTTTGAATAATGGCTTATGGGCTAACCAGACTCAACGAATGCGAACATACACTAAGGTTCAAAAATGTGGCTCTGTTGGAAGATGTATTGATGTTACCCGTTACAAAGGATACGATGAACTCCGCCACGATTTGGCACGTATGTTTGGGATTGAAGGGCAGCTAGAAGATCCTCAAAGAACAGAGTGGAAACTAGTATATGTTGATCATGAAAATGACATTCTCCTTGTTGGTGATGACCCTTGGGAAGAATTTGTAAGCTGTGTTCAGAGTATAAAGATATTATCATCTGCTGAGGTGCAGCAAATGAGCTTGGATGGGGATCTAGGTCAAGTTCCAATCGCCAATCAAGCTTGTAGCGGCACGGAAGGCGGCGGCAATGCATGGAGGGGCTATGATGATAACTCTGCAGCCTCGTTCAACCGATGA 3345 0.4517 MKAPSNGFLPNSGEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKEADFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKEAILASDMGLKQNQQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKRANRQQPALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERPGRVSIWDIEPVVTPFYICPPPFFRPKFPKQPGMPEDESDIENAFKRAMPWLGEDLGMKDASSSIFPGLSLVQWMSMQQNNQFSAAQSGFIPPSMFSSNTLHGNLNSDNSSKILNFQAPVLSAPNLQFNKPNLPNQVNQLQQSSTSWPQQQQQQQKLQSLLQSPINQLQQQQRQQQLPEPQNLPQQPQQQPQQAQQRAQQLQQQQQPQQSCQQTIMNNGVVTSNQIPNQCVQQPVNYSQLQVQQQQLISGSMAPQQSIQPAGKNTMLMTSLPQDSQFQQQMDQQVSLLQRQQQQHTQLQQSPLQFLQQNVSQRAPPQTQGTQMSHQNPSEQQIQLQLLQKLQQQQQLLTTSTPHLQSQLLQQQNTHQPNQQLPQLPQSQHQPQQLVNNAFSMDKFLNSNNFSSSALMQSQQLPVTQPQNTQKSPTTTGAPSSLTDVDAPSCSTSPSTNTCQISPPNLLKRNQVPTTLSGISVVEPTNNLMHELQSKSDMQIKHELPGLKGPDQLKYKGTISDQLEASSSGTSYCIDPGNIHQNFQLPNFCMDGDVQSHPRSNLPFSSNLDGLIPDTMLSRGYDSSKDLQNLLSNYGGAPRDIETELSTAAISSQSFGVPNMPFKPGCSSDIAMNDAGVLNNGLWANQTQRMRTYTKVQKCGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTEWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGQVPIANQACSGTEGGGNAWRGYDDNSAASFNR* 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g1938 1114 ProSiteProfiles PB1 domain profile. 987 1080 IPR000270 GO:0005515
Aev04g1938 1114 SUPERFAMILY CAD & PB1 domains 1001 1065 - -
Aev04g1938 1114 PANTHER AUXIN RESPONSE FACTOR 19 1 1101 - -
Aev04g1938 1114 CDD B3_DNA 125 217 IPR003340 GO:0003677
Aev04g1938 1114 Gene3D - 982 1076 - -
Aev04g1938 1114 Pfam AUX/IAA family 984 1073 IPR033389 -
Aev04g1938 1114 SMART B3_2 126 228 IPR003340 GO:0003677
Aev04g1938 1114 MobiDBLite consensus disorder prediction 653 677 - -
Aev04g1938 1114 MobiDBLite consensus disorder prediction 470 546 - -
Aev04g1938 1114 MobiDBLite consensus disorder prediction 751 802 - -
Aev04g1938 1114 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 1101 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aev04g1938 1114 Gene3D - 289 360 - -
Aev04g1938 1114 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Aev04g1938 1114 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Aev04g1938 1114 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Aev04g1938 1114 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Aev04g1938 1114 MobiDBLite consensus disorder prediction 704 726 - -
Aev04g1938 1114 Gene3D - 123 227 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g1938 Aev-Chr4 16150413 16157530 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g1938 1 488 B3 DNA Binding Superfamily AT1G19220 83.197 0.0 840
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Aev04g1938 AUX_IAA 2.4e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g1938 - K14486 gmx:100815277 1613.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev04g1938 04 16150413 16157530 Aev04g1938 04 16150413 16157530 ECH
Aev01g2750 01 30099950 30106149 Aev04g1938 04 16150413 16157530 PCT