Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g1936 ATGGTGAAGCAGATCGTGGAAAAAGCTGCGTCGGAGAGAAGTGATTTGAAGTACAAGGGTGTAAGGAAGAGGAAGTGGGGCAAATATGTGTCTGAAATTAGGCTACCCAATAGCCGCCAGAGGATTTGGTTGGGTTCATATGACACCGCCGAGAAGGCGGCGCGTGCCTTCGACGCCGCCGTGTTCTGCCTACGTGGCGGCGGCGCCAAGTTCAATTTCCCCGGCGATCCACCGGTGATCGACGGTGGAAGGTCTATGACCCCCTCACAAATCCAGATTGCTGCTGCCCAGTACGCCAATTCGGAGCCCCGAGTTGAGTATTCGGGTCAACCCGTTTTCTCACCTGAGGATTCTGTTTCTTCTTTGACTTCGGAGGAGACGGAGACGGTGGCTATAGAGACACTGTCGCCGTCCGTCTCTAACGGAACCGTCCAAACGGACAGTGAGGTCGCAACAAACGACTCGATTTCGGATCTGCTTGCGAGAATCGGGTCGGGTAATTTTGACCCGGATTGCTTCTTTTCGGGTCTGGATGAGTTTGGTGGCGATTTCTATCTGCCGGAGATGTCAAGTGTTGATTACGGAGAAGAGAACTTGGAAGGGTTGATAATTGAGGACTCTTTCTTGTGGAATTTCTAA 639 0.5227 MVKQIVEKAASERSDLKYKGVRKRKWGKYVSEIRLPNSRQRIWLGSYDTAEKAARAFDAAVFCLRGGGAKFNFPGDPPVIDGGRSMTPSQIQIAAAQYANSEPRVEYSGQPVFSPEDSVSSLTSEETETVAIETLSPSVSNGTVQTDSEVATNDSISDLLARIGSGNFDPDCFFSGLDEFGGDFYLPEMSSVDYGEENLEGLIIEDSFLWNF* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g1936 212 Gene3D AP2/ERF domain 17 75 IPR036955 GO:0003700|GO:0006355
Aev04g1936 212 SUPERFAMILY DNA-binding domain 17 74 IPR016177 GO:0003677
Aev04g1936 212 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
Aev04g1936 212 CDD AP2 17 74 IPR001471 GO:0003700|GO:0006355
Aev04g1936 212 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
Aev04g1936 212 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
Aev04g1936 212 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Aev04g1936 212 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Aev04g1936 212 PANTHER TRANSCRIPTION FACTOR AP2-EREBP FAMILY-RELATED 5 212 - -
Aev04g1936 212 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g1936 Aev-Chr4 16129476 16130114 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g1936 17 212 AP2-EREBP Transcription Factor Family AT1G19210 47.030 3.31e-49 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aev04g1936 AP2 7.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g1936 - - gmx:732656 245.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev04g1936 04 16129476 16130114 Aev04g1936 04 16129476 16130114 ECH