Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g1890 ATGGGGGAGGATCAGCAGTTGGGAAATGAAGGGTGGACACTAGTCTCCAGGAAGAGAGTGACCCCTTTGCCAGTTCGAAACCAATGGAACAATAATGATCAAACATCAACAAGATTGGAGAATAAGAGGGTGAAACTTGTTGAAAGAAGGACTCATACGGTGTTTGTCGATGGACTTGAAGAATCCACATCCAAAGGTCAGCTCCGATATGCCTTTGGTTGGAGTGGGTGGATAGTTGACATTTTCATTTCAAGGAAAAAGAGAAAAGGGAGAAAGGATTGTTTCGCCTTCATCCAGTTTGAAGATAAGGGTGGCGCTATGAGGGCGGTTGAAAGAATGAATGGTGCAATTGTGAACGGTATAAGAGTTCTAGTCAAAGAAGAGAGTTATAACAGGAGGCTAGAAAATAATAGTTCTAATCACAAGGAACCCTTGCAAGTTAGGAAGCTAGGGCTGAATGTGACTTCTCAGGAACTGATCTGGGTTCCGATGGACAACTTAGAGAGGGTGGTAACTATGGACTCAAAACCTTGCCTTCTCAAAGAAGTATGTGTTGAGTCCTGTAAAGATCAGTCGCCGGCGGTGTGGTGTGGCTCAAGAAGAGTCTGGCTTGAAGTAATGGGCATTCCTGTTCATGCATGGGACAAGGACTCTCTACTAAAAGTAGGGAATCTGTGGGGTGAGACTTTGATGTTGGATCCTGATACAGAGAATGGGAAGTTATTCAGTGTTGCAAGAATCCTTATTGATACATATCAAAGGAATCCGATATGTGAGGATATCTGCGTGAAATGCGACGAAATTCCCTATAGGTCTCATCTTAAGGAGGTTGGACAGGATATATATGGAATCCAATGCTTCTCTATTGAAGCATGCAAGGATGGAAGTATGGACGGAGTTGAGGTGCTGAGTGAAACTAGTGATGACCAAGGTCCAAAAATGAATGCTCCGGTGGTCGGAGATGGAAAGTCACTGACGAGCTAA 984 0.44 MGEDQQLGNEGWTLVSRKRVTPLPVRNQWNNNDQTSTRLENKRVKLVERRTHTVFVDGLEESTSKGQLRYAFGWSGWIVDIFISRKKRKGRKDCFAFIQFEDKGGAMRAVERMNGAIVNGIRVLVKEESYNRRLENNSSNHKEPLQVRKLGLNVTSQELIWVPMDNLERVVTMDSKPCLLKEVCVESCKDQSPAVWCGSRRVWLEVMGIPVHAWDKDSLLKVGNLWGETLMLDPDTENGKLFSVARILIDTYQRNPICEDICVKCDEIPYRSHLKEVGQDIYGIQCFSIEACKDGSMDGVEVLSETSDDQGPKMNAPVVGDGKSLTS* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g1890 327 SUPERFAMILY RNA-binding domain, RBD 47 127 IPR035979 GO:0003676
Aev04g1890 327 MobiDBLite consensus disorder prediction 302 327 - -
Aev04g1890 327 CDD RRM_SF 54 126 - -
Aev04g1890 327 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 54 120 IPR000504 GO:0003723
Aev04g1890 327 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 52 130 IPR000504 GO:0003723
Aev04g1890 327 Pfam Domain of unknown function (DUF4283) 200 249 IPR025558 -
Aev04g1890 327 SMART rrm1_1 53 126 IPR000504 GO:0003723
Aev04g1890 327 Gene3D - 25 159 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g1890 Aev-Chr4 15662526 15663740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g1890 38 115 Eukaryotic Initiation Factors Gene Family AT2G23350 33.333 2.10e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g1890 - K25101 ahf:112794598 86.6557