Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g1838 ATGACACCAAACAAGAAGCAGAAAATGATCGCACCCATTCCCCCTTCAAACCAAGTCATCGACGTTGAATCCTTCGTCTTCACTCCCATCTTCCACAAGGGCACCACCATCTCCTCTCCCATCTCCGTCGAGCAGTACGCCCTCGACAGAGACCTTCACCTCTCCATCGCCGCCTCCCTCCGCCTTCCCCTCCCCACCACCACCAACGTCGTATACCTCTCCGACGAAGAAAACGACGACGTAACCATCCTCACTTCAAAACCCCTAAACACCCCTTTCGGAAGACGAAAAAGAATCAGAGAAAAAGGAGAATCCTCAGACAGCGCCGATCCATTCCTCTGCGAAATCTGCACCGACACCAAACAGAAAAGGGACTCCTTTAACATAACCGGTTGCTCCCACTCTTACTGCCTCGACTGCGTTGTAATGTACGTGACCTCGAAGCTTCAGGAGAACGCGATCGAAATTCACTGCCCTGTTCCCGATTGTGTGGGGTTGTTGGAGATGGACACTTGCCGCGAGATTCTTCCCAGTGAGGTTTTTGATCTGTGGGGGAATGCTCTGTGTGAGGCTGTGATTGATGTCACTGAGAAATTCTATTGCCCCTTCAAGGATTGCTCTGCTTTGATGATCGACGACGGTGGAGTGGTTGTTAGGGAATCGGAGTGCCCTAATTGCAGGAGGATGTTCTGTGCTCAGTGCAAGGTGCCTTGGCATGATGGGATTGAGTGTGAGGAGTTTCAGAAGCTGAACAAGGAGGAGAGGGAGAAAGAGGATATCATGCTCATGAAGCTCGCAGAGAGCAAGAAATGGAGGAGGTGCCCCAAATGCAAGTTCTTTGTTGAGAAATCTGTGGGGTGCATGTACATGTTATGCAGGTGTGGAAATGCCTTCTGTTACAACTGTGGAGCCCCTTCTTCCGTTGGTGGATCACACTATTGCAAGAGCTGTAAACGTTAG 960 0.5062 MTPNKKQKMIAPIPPSNQVIDVESFVFTPIFHKGTTISSPISVEQYALDRDLHLSIAASLRLPLPTTTNVVYLSDEENDDVTILTSKPLNTPFGRRKRIREKGESSDSADPFLCEICTDTKQKRDSFNITGCSHSYCLDCVVMYVTSKLQENAIEIHCPVPDCVGLLEMDTCREILPSEVFDLWGNALCEAVIDVTEKFYCPFKDCSALMIDDGGVVVRESECPNCRRMFCAQCKVPWHDGIECEEFQKLNKEEREKEDIMLMKLAESKKWRRCPKCKFFVEKSVGCMYMLCRCGNAFCYNCGAPSSVGGSHYCKSCKR* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g1838 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 195 IPR013083 -
Aev04g1838 319 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 20 318 - -
Aev04g1838 319 Pfam IBR domain, a half RING-finger domain 197 244 IPR002867 -
Aev04g1838 319 SUPERFAMILY RING/U-box 190 249 - -
Aev04g1838 319 ProSiteProfiles TRIAD supradomain profile. 110 319 IPR044066 -
Aev04g1838 319 SUPERFAMILY RING/U-box 109 194 - -
Aev04g1838 319 ProSitePatterns Zinc finger RING-type signature. 132 141 IPR017907 -
Aev04g1838 319 Gene3D - 241 319 - -
Aev04g1838 319 SMART ibrneu5 182 244 IPR002867 -
Aev04g1838 319 SMART ibrneu5 254 317 IPR002867 -
Aev04g1838 319 SMART ring_2 274 317 IPR001841 -
Aev04g1838 319 SMART ring_2 114 161 IPR001841 -
Aev04g1838 319 ProSiteProfiles Zinc finger RING-type profile. 114 160 IPR001841 -
Aev04g1838 319 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 20 318 IPR031127 GO:0004842|GO:0016567
Aev04g1838 319 SUPERFAMILY RING/U-box 255 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g1838 Aev-Chr4 14763323 14765396 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g1838 114 305 C3H Transcription Factor Family AT2G19610 32.512 1.34e-25 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g1838 K11975 - gmx:100803898 376.326