Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g1788 ATGAGCTTTGGAGGCAGAGGAAAAATGAGGGACACAAGCTTCTCAACATCAGAAGCAAGCAACACCAACACCAAAACCAACATCAACATGGGCAAGGCACTTGCTCAGTACAGTGTAGATGCTGGGATTCTTGCTGAGTTTGAGGAATCTGGTGTGTCTGGAAAATCATTTGACTACTTAAAATCGGTTCTTGACCCTCCCAGGTTAGTATCTGAAGATAAAATGGTTGCATACTTGTCAAAAATCCAAAGGGGTGGTCTCATCCAACCCTTTGGTTGCATGATAACAATTGAGGAACCCTCTTTCAGAATCATTGGGTTTAGTGAGAATTGCTTCCAGTTGTTGGGTTTGGAGGGCCATCAATTTGACTCAAAACAGTTAATGAGGGGTACTCTCATTGGTGTTGATGCCACAATACTTTTCACTCCTTCTTCTGGTGCTTCCCTTGCAAAAGCTGTGGCTTCAAGGGAAATCTCACTCTTGAACCCTGTTTGGGTCTATTCAAGGGAAACCCAGAAGCCATTTTATGCCATACTTCATCGGATTGATGTTGGCGTTGTGATTGATTTAGAGCCTGCAAGGTCCAGTGACCCTGCATTGTCTTTTGCTGGGGCTGTGCAGTCACAGAAACTGGCTGTTAGAGCAATTTCAAGGCTTCAGTCTCTTCCTGGGGAAGATATTGGTCTATTGTGTGACACTGTTGTTGAGGAGGTTCAGAAGCTCACTGGTTATGACAGGGTTATGGTTTATAAGTTCCATGAAGATGATCATGGTGAAGTTGTTTCTGAGATTAGGAGGTCGGATTTAGAGCCTTACTTAGGTTTGCACTACCCTGCCACAGATATCCCTCAGGCGGCTCGCTTCTTGTTCAGGCAAAATCGGGTCAGGATGATCTGTGATTGCCATGCAAAACCTGTTAAGGTCTTTCAGAGTGAGGAGTTAAGGCAGCCTCTTTGCTTAGTCAACTCGACCCTTAGGTCGCCACATGGTTGTCACACACAGTATATGGCTAACATGGGCTCGATTGCCTCTCTGGTCATGGCAATTATCGTCAATGGAAATGATACAACAAGGCTCTGGGGTTTGCTAGTTTGTCACCACACTTCGCCACGCTATGTGCCTTTCCCCGTTCGCTATGCTTGCGAGTTCCTTATGCAGGCTTTTGGAGTGCAGCTTTACATGGAGATTCAATTGGCAGCACAAATGGAAGAGAAGAGGATTCTAAAAACACAAACCTTGCTGTGTGACATGCTCCTACGCGATGCCCCATTTGGCATTGTGACTCAATCTCCTAGTATCATGGATCTTGTGAAGTGTGATGGGGCTGCCTTGTACTATGATGGAAGCTGTTGGTTGTTAGGCACAACCCCAACTGAATCACAGGTAAAAGACATTACTGAATGGCTGCTTAGTAATCATGGGGACTCGACAGGTTTGAGCACGGTTAGTTTGGCTGATGCTGGTTATCCAGATGCTGCTTTACTAGGGGATGCAGTTTGTGGCATGGCCACAGCAAGAATCAGTTCAAGACATTTCTTGTTCTGGTTCAGATCTCACACTGCTAAGGAAGTAAAATGGGGAGGAGCCAAGCACCACCCACAGGATAAAGATGATGGAGGAAAAATGAACCCAAGGTCATCATTCAAAGCTTTTCTAGAAGTAGTCAAAAGTAAAAGCTTGCCATGGGAAGTTTCAGAAATCAATGCTATTCACTCATTACAACTTATAATGAGAGATTCATCCTGTAAATCTGAGATTGTTGGCCACAAGACTCTGAACTACATACAGAAAAGTGAATCTGCAACCGGTGGGATGGATGAACTCAGTTCGGTAACATTTGAAATGGTGAGATTAATCGAGACAGCAACGGTCCCAATTTTTGGGGTCGACTCAGGTGGCCTAATCAATGGATGGAATGCAAAAATTGCTGAATTGACAGGTTTGCAGGCCAGTGAAGCTATGGGAAAATCTCTAGTAAATGAAGTAGTGCATGCAGATTCGTGTGAAAATCTCGAAAATATTCAAAGTAGAGCCTTGCAAGGCCAAGAGGACAAAAATGTTGAGTTGAAATTGAAACACTTTGGGCTTCATCAAGAAAATGAAGTTGTATATCTCATAGTCAATGCATGTACTAGTAGGGACTACACAAATTCTGTAGTTGGAGTGTGCTTTGTAGGTCAAGATATCACTTATGAGAAAGTTGTTCTAGATAAATTCGTCAAGTTGGAAGGCGATTACAAAGCTATCATACAGAGTCTTAATCCGCTGATTCCACCCATATTTGCTTCTGATGAGAACGCCTGCTGTTCTGAATGGAATGCTGCCATGGAAAGGCTAACTGGTTGGAAAAGAGATGAAGTAATAGGAAAAATGCTTCCCGGCGAAATCTTTGGAAGCTTTTGTAGATTGAAAGGTCAAGATACACTGACTAATTTTATGATTTTACTGTATCGCGGAATAAGTGGTCAAGATTTTGAGAAATTCCCCTTTGGATTTTTTGATAGAAATGGAGAATTTATTGAGGCTTACATAACAGCAAACAAAAGAATTGATGCAGGTGGGAATATGATTGGCTGTTTCTGCTTCTTACAGATTATATCAACTGATCCAAATCAACCTTCTGAGGGACAAAGGCCTCAAGACAGGAAAAGTGTTTCTGAATCCAAGGAGTTGGCTTATATACTACAAGAGATGAAGAATCCTTTAAATGGTATTCGATTTACACACAAACTTTTGGAAAATACGGCTGTCTCTGAAAATCAGAAACAATTCCTTGACACTAGTGATGCATGTGAAAGACAGATAATGGCAATTATTGAGGATACAGATTTAGGAAGAATCAATGAAGGCACTATGCAGCTAAACATGGAAGAGTTTCTTCTGGGAAATATTTTAGATGCAATTGTCAGTCAAGTCATGATCTTAGTAAGAGGGAAAAACATGCAGCTGTTTCATGAGATTCCTGATGAACTCAAAACACTTTCTCTATATGGCGACCAAATTAAGCTTCAAGTGGTCTTGTCTGACATTCTCCTTAATGTAGTCAACCATACACCTTCGCCAAACGGCTGGGTTGAAATCAAGATTTCACCTGGTTTAAAGATAATACAGGATGGTGATGAGTTTATCAATTTGGAGTTCAGAATGACTCATTCTGGTCAAGGTCTTCCTTCCACTATTCTCCATGATATGTTTGAAGGAGGGAATCAATGGACTACACAGGAAGGTCTTGGGCTATATATGTCCAGGAAAATGCTTAGTAGGATGAATGGTCATGTTCACTACGTGAGAGAGCATAATAAGTGTTACTTCCACATTGATCTTGAACTTAGAACAAGAAAAGAAAGGCAAAGGAATTTGCAAGCAGAGACAAGCATGTTAAGTTAA 3387 0.4181 MSFGGRGKMRDTSFSTSEASNTNTKTNINMGKALAQYSVDAGILAEFEESGVSGKSFDYLKSVLDPPRLVSEDKMVAYLSKIQRGGLIQPFGCMITIEEPSFRIIGFSENCFQLLGLEGHQFDSKQLMRGTLIGVDATILFTPSSGASLAKAVASREISLLNPVWVYSRETQKPFYAILHRIDVGVVIDLEPARSSDPALSFAGAVQSQKLAVRAISRLQSLPGEDIGLLCDTVVEEVQKLTGYDRVMVYKFHEDDHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLFRQNRVRMICDCHAKPVKVFQSEELRQPLCLVNSTLRSPHGCHTQYMANMGSIASLVMAIIVNGNDTTRLWGLLVCHHTSPRYVPFPVRYACEFLMQAFGVQLYMEIQLAAQMEEKRILKTQTLLCDMLLRDAPFGIVTQSPSIMDLVKCDGAALYYDGSCWLLGTTPTESQVKDITEWLLSNHGDSTGLSTVSLADAGYPDAALLGDAVCGMATARISSRHFLFWFRSHTAKEVKWGGAKHHPQDKDDGGKMNPRSSFKAFLEVVKSKSLPWEVSEINAIHSLQLIMRDSSCKSEIVGHKTLNYIQKSESATGGMDELSSVTFEMVRLIETATVPIFGVDSGGLINGWNAKIAELTGLQASEAMGKSLVNEVVHADSCENLENIQSRALQGQEDKNVELKLKHFGLHQENEVVYLIVNACTSRDYTNSVVGVCFVGQDITYEKVVLDKFVKLEGDYKAIIQSLNPLIPPIFASDENACCSEWNAAMERLTGWKRDEVIGKMLPGEIFGSFCRLKGQDTLTNFMILLYRGISGQDFEKFPFGFFDRNGEFIEAYITANKRIDAGGNMIGCFCFLQIISTDPNQPSEGQRPQDRKSVSESKELAYILQEMKNPLNGIRFTHKLLENTAVSENQKQFLDTSDACERQIMAIIEDTDLGRINEGTMQLNMEEFLLGNILDAIVSQVMILVRGKNMQLFHEIPDELKTLSLYGDQIKLQVVLSDILLNVVNHTPSPNGWVEIKISPGLKIIQDGDEFINLEFRMTHSGQGLPSTILHDMFEGGNQWTTQEGLGLYMSRKMLSRMNGHVHYVREHNKCYFHIDLELRTRKERQRNLQAETSMLS* 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g1788 1128 CDD HATPase_Phy-like 997 1110 IPR044767 -
Aev04g1788 1128 Gene3D PAS domain 81 329 - -
Aev04g1788 1128 CDD PAS 622 729 IPR000014 -
Aev04g1788 1128 PANTHER TWO-COMPONENT HISTIDINE KINASE 30 1117 - -
Aev04g1788 1128 Gene3D - 401 574 IPR043150 -
Aev04g1788 1128 SUPERFAMILY PYP-like sensor domain (PAS domain) 617 725 IPR035965 -
Aev04g1788 1128 TIGRFAM sensory_box: PAS domain S-box protein 618 733 IPR000014 -
Aev04g1788 1128 Gene3D PAS domain 758 870 - -
Aev04g1788 1128 Pfam PAS fold 745 865 IPR013767 GO:0006355
Aev04g1788 1128 Pfam PAS fold 614 729 IPR013767 GO:0006355
Aev04g1788 1128 SMART HKATPase_4 998 1112 IPR003594 -
Aev04g1788 1128 SMART pas_2 613 680 IPR000014 -
Aev04g1788 1128 SMART pas_2 744 814 IPR000014 -
Aev04g1788 1128 CDD HisKA 886 941 IPR003661 GO:0000155|GO:0007165
Aev04g1788 1128 PRINTS Phytochrome signature 511 530 IPR001294 GO:0006355|GO:0009584
Aev04g1788 1128 PRINTS Phytochrome signature 707 724 IPR001294 GO:0006355|GO:0009584
Aev04g1788 1128 PRINTS Phytochrome signature 614 630 IPR001294 GO:0006355|GO:0009584
Aev04g1788 1128 PRINTS Phytochrome signature 326 347 IPR001294 GO:0006355|GO:0009584
Aev04g1788 1128 PRINTS Phytochrome signature 633 648 IPR001294 GO:0006355|GO:0009584
Aev04g1788 1128 PRINTS Phytochrome signature 426 446 IPR001294 GO:0006355|GO:0009584
Aev04g1788 1128 PRINTS Phytochrome signature 544 562 IPR001294 GO:0006355|GO:0009584
Aev04g1788 1128 PRINTS Phytochrome signature 727 747 IPR001294 GO:0006355|GO:0009584
Aev04g1788 1128 PRINTS Phytochrome signature 141 163 IPR001294 GO:0006355|GO:0009584
Aev04g1788 1128 PRINTS Phytochrome signature 241 260 IPR001294 GO:0006355|GO:0009584
Aev04g1788 1128 SUPERFAMILY GAF domain-like 404 579 - -
Aev04g1788 1128 SMART gaf_1 226 406 IPR003018 GO:0005515
Aev04g1788 1128 MobiDBLite consensus disorder prediction 9 25 - -
Aev04g1788 1128 Pfam His Kinase A (phospho-acceptor) domain 888 950 IPR003661 GO:0000155|GO:0007165
Aev04g1788 1128 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 943 1108 IPR036890 -
Aev04g1788 1128 SUPERFAMILY PYP-like sensor domain (PAS domain) 759 861 IPR035965 -
Aev04g1788 1128 SUPERFAMILY GAF domain-like 206 392 - -
Aev04g1788 1128 MobiDBLite consensus disorder prediction 1 25 - -
Aev04g1788 1128 SUPERFAMILY PYP-like sensor domain (PAS domain) 82 197 IPR035965 -
Aev04g1788 1128 PIRSF Phytochrome_conventional 8 1119 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Aev04g1788 1128 Gene3D - 928 1106 IPR036890 -
Aev04g1788 1128 ProSiteProfiles PAC domain profile. 685 741 IPR000700 -
Aev04g1788 1128 CDD PAS 756 864 IPR000014 -
Aev04g1788 1128 ProSiteProfiles Histidine kinase domain profile. 893 1112 IPR005467 -
Aev04g1788 1128 SMART HisKA_10 886 950 IPR003661 GO:0000155|GO:0007165
Aev04g1788 1128 Pfam GAF domain 226 396 IPR003018 GO:0005515
Aev04g1788 1128 Pfam PAS fold 77 193 IPR013654 GO:0006355
Aev04g1788 1128 ProSiteProfiles PAS repeat profile. 745 797 IPR000014 -
Aev04g1788 1128 Pfam Phytochrome region 409 580 IPR013515 GO:0006355|GO:0009584
Aev04g1788 1128 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 226 386 IPR016132 -
Aev04g1788 1128 Gene3D - 207 557 IPR029016 -
Aev04g1788 1128 PANTHER PHYTOCHROME E 30 1117 - -
Aev04g1788 1128 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 998 1110 IPR003594 -
Aev04g1788 1128 ProSiteProfiles PAS repeat profile. 611 682 IPR000014 -
Aev04g1788 1128 Gene3D PAS domain 613 733 - -
Aev04g1788 1128 ProSitePatterns Phytochrome chromophore attachment site signature. 326 335 IPR013516 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g1788 Aev-Chr4 13981216 13986366 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g1788 14 1112 Histidine Kinase Gene Family AT4G18130 63.726 0.0 1477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g1788 K12123 - gmx:100808192 1939.85