Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g1642 ATGGGTGGAAACGGTAAGCACCGTTGGAAAATCTCCTTCCATCGTTCATCTTCATCTTCAAATTCCAAAGTGGAGCAGCAACACAAACATCCTCCGAACGAGTTCCTATGCCCCATTTCCGGGTCGTTAATGTCCGACCCGGTTGTCGTCTCTTCGGGTCAAACCTTCGAGCGCATCTCCGTCCAAGTCTGCTTAGACCTCAATTTCGCCCCCACCCTTCCCGACGGAACCCGACCCGATTTCTCAACCCTTATTCCTAACCTCGCTATCAAAACCACTATCCTTAACTGGTGTCGTGACTCCAAAACGCTGCACCCGCCCGCACCGGATTACTCCTCCGTCGAGCGAATCGTTCGCGCTGCAATGGCCGCCGCCGCGCCTCCGCCGGACCCCGAAATTAGGGTTTCTGAGAAGGAGCTGCTGAAGGCCGTGGCGGATAATCCGCCGGTGATATTCTCACATGCTGCCACCGAGTTAGGCCACCGAGTCAACCACTTTAACTCGGGGTCATCTGAGGAGTCCGTTGTAATCGCCGCGAGTCCTGGAACACCGTTACCGTTCGCGGTTCGCCCGATATGCTTCTCTTCTTCATCTTCTTCCTCCGTTGAAATCAGCGAGGTCGAGATCCATGGGCAGAACCCTAACCTCCCTGTCTCGGAGGAGGAAGAGAAATTGCTAGCGAAGATGAAGAGCAGCGAGGTTTTCGAGCAGGAAGAAGGAGTGATCTCGCTTCGCAGCGTCACGAGGAACAGCGATGAAGCTAGGGTTTCGCTGTGCACGCCGCGTTTGCTCCACGCGCTGCGGTCGCTGGTGGCGTCGCGATACGGCGTCGTTCAGGTCAACGCGGTTGCCTCATTGGTCAACCTTTCGCTGGAGAGAGTCAACAAGGTGAAGATCGTGCGGTCAGGATTCGTTCCTTTCTTGATCGACGCGCTGAAGGGAGGATCCGCTGAGACGCAGGAGCACGCTGCGGGCGCGCTCTTCAGTTTAGCTCTCGACGACGATAACAAGATGGCGATTGGAGTTCTCGGCGCGTTGGAGCCGTTGATGCACGCGCTCCGATCCGAGTCCGAGCGGACTCGGCACGACTCGGCGCTTGCTCTGTACCACCTGACTCTGGTTCAGAGCAACCGAGTCAAGCTCGTCAAACTCGGCGTGATCCCCACGCTCCTCTCGATGGTGAAATCCGGCGCGTTGGCGAGTAGGGTTTTGCTCATTCTTTGCAATCTCGCGGTTTCTACGGAGGGGAGGACGGCTATGCTGGACGCGGACGCAGTGGGGTGTTTCGTGGGGATGATGAGGGGGAGCGAGTTGGACTCCGAGTCGACTCGGGAGAACTGTGTTGCGGCTCTCTACGCGCTGAGTCATAGGAGCATGAGGTTTAAGGGGCTTGCCAGGGAGGCTGGGGTGGTGGAGGTGTTGAAGCAGGTGGAGGAGACTGGGACTGATCGGGCGAGGGAGAAGGCCAAGAGGGTGTTGCAGATGATGAGGGCCGGTGGTGATGGTGAAGACGAGGAAGGGTTTGATCTTGACTCGGTATTGGAATCCGGCGGGTTCACTCGGACGAGGCACAGGGTTGGTGGTGGTGGTGGTGGTTTTGGGAGGAGTAATAATATCAACCATTACAATTCCACTACATTTTAG 1644 0.5681 MGGNGKHRWKISFHRSSSSSNSKVEQQHKHPPNEFLCPISGSLMSDPVVVSSGQTFERISVQVCLDLNFAPTLPDGTRPDFSTLIPNLAIKTTILNWCRDSKTLHPPAPDYSSVERIVRAAMAAAAPPPDPEIRVSEKELLKAVADNPPVIFSHAATELGHRVNHFNSGSSEESVVIAASPGTPLPFAVRPICFSSSSSSSVEISEVEIHGQNPNLPVSEEEEKLLAKMKSSEVFEQEEGVISLRSVTRNSDEARVSLCTPRLLHALRSLVASRYGVVQVNAVASLVNLSLERVNKVKIVRSGFVPFLIDALKGGSAETQEHAAGALFSLALDDDNKMAIGVLGALEPLMHALRSESERTRHDSALALYHLTLVQSNRVKLVKLGVIPTLLSMVKSGALASRVLLILCNLAVSTEGRTAMLDADAVGCFVGMMRGSELDSESTRENCVAALYALSHRSMRFKGLAREAGVVEVLKQVEETGTDRAREKAKRVLQMMRAGGDGEDEEGFDLDSVLESGGFTRTRHRVGGGGGGFGRSNNINHYNSTTF* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g1642 547 Gene3D - 218 495 IPR011989 -
Aev04g1642 547 CDD RING-Ubox 36 83 - -
Aev04g1642 547 Pfam Armadillo/beta-catenin-like repeat 295 331 IPR000225 GO:0005515
Aev04g1642 547 Pfam Armadillo/beta-catenin-like repeat 333 372 IPR000225 GO:0005515
Aev04g1642 547 Pfam U-box domain 32 100 IPR003613 GO:0004842|GO:0016567
Aev04g1642 547 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842|GO:0016567
Aev04g1642 547 PANTHER U BOX DOMAIN-CONTAINING 1 530 - -
Aev04g1642 547 SMART Ubox_2 34 97 IPR003613 GO:0004842|GO:0016567
Aev04g1642 547 MobiDBLite consensus disorder prediction 1 36 - -
Aev04g1642 547 SMART arm_5 292 332 IPR000225 GO:0005515
Aev04g1642 547 SMART arm_5 413 456 IPR000225 GO:0005515
Aev04g1642 547 SMART arm_5 333 373 IPR000225 GO:0005515
Aev04g1642 547 SMART arm_5 374 412 IPR000225 GO:0005515
Aev04g1642 547 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 106 IPR013083 -
Aev04g1642 547 SUPERFAMILY RING/U-box 16 104 - -
Aev04g1642 547 SUPERFAMILY ARM repeat 223 496 IPR016024 -
Aev04g1642 547 MobiDBLite consensus disorder prediction 525 547 - -
Aev04g1642 547 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 1 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g1642 Aev-Chr4 12148951 12150594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g1642 1 528 U-box Gene Family AT5G65200 59.124 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g1642 - - aip:107643932 796.578