Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aev04g1639 | ATGATGATGGCATCATTTGGAGGCACAAGCCAGAAATGCAAAGCATGTGAGAAGACAGTGTACTTGGTGGATCAACTCACAGCTGACAATAAGGTCTATCACAAGTCCTGCTTCAGATGTCACCACTGTAAGAGCACCCTCAAGTTAAGTAATTATTGTTCTTTTGAGGGAGTTTTATACTGTAAGCCTCACTTTGATCAACTCTTTAAGATGACTGGAAGCTTGGACAAAAGTTTTGAAGGTATTCCAAGAACTGCTAGACTTGAAAGATCTTCTGATCAGGTGCAAACCAATAGCAGAGTTTCAAGTTTATTTGCTGGAACTCAGGAAAAATGTGTTGCTTGCAAGAAAACAGTATACCCTATTGAAAAGGTAGCAGTTGATGGAGCATGTTACCATAAGGCTTGTTTCAGGTGCACACATGGAGGATGTGTAATTAGCCCCTCAAATTATGTGGCGCACGAACACCGGCTTTATTGCCGGCACCACCATACTCAGCTCTTCAAGCAGAAAGGAAACTTCAGCAAACTTGACATGCAAGAAAATGAAGTTTCAGGGCTGATTCATGAGACCACCACAACAGAACAAGACCAGTAA | 597 | 0.4188 | MMMASFGGTSQKCKACEKTVYLVDQLTADNKVYHKSCFRCHHCKSTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGIPRTARLERSSDQVQTNSRVSSLFAGTQEKCVACKKTVYPIEKVAVDGACYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHTQLFKQKGNFSKLDMQENEVSGLIHETTTTEQDQ* | 199 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aev04g1639 | 198 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 39 | 79 | - | - | |
Aev04g1639 | 198 | ProSiteProfiles | LIM domain profile. | 110 | 170 | IPR001781 | - | |
Aev04g1639 | 198 | CDD | LIM1_SF3 | 9 | 70 | - | - | |
Aev04g1639 | 198 | ProSiteProfiles | LIM domain profile. | 11 | 71 | IPR001781 | - | |
Aev04g1639 | 198 | SMART | lim_4 | 111 | 163 | IPR001781 | - | |
Aev04g1639 | 198 | SMART | lim_4 | 12 | 64 | IPR001781 | - | |
Aev04g1639 | 198 | CDD | LIM2_SF3 | 112 | 172 | - | - | |
Aev04g1639 | 198 | Gene3D | Cysteine Rich Protein | 106 | 176 | - | - | |
Aev04g1639 | 198 | Gene3D | Cysteine Rich Protein | 8 | 77 | - | - | |
Aev04g1639 | 198 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 6 | 38 | - | - | |
Aev04g1639 | 198 | Pfam | LIM domain | 112 | 167 | IPR001781 | - | |
Aev04g1639 | 198 | Pfam | LIM domain | 13 | 67 | IPR001781 | - | |
Aev04g1639 | 198 | PANTHER | GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN | 3 | 192 | - | - | |
Aev04g1639 | 198 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 104 | 137 | - | - | |
Aev04g1639 | 198 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 138 | 176 | - | - | |
Aev04g1639 | 198 | ProSitePatterns | LIM zinc-binding domain signature. | 13 | 47 | IPR001781 | - | |
Aev04g1639 | 198 | PANTHER | OS06G0237300 PROTEIN | 3 | 192 | IPR045268 | GO:0051015 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aev04g1639 | Aev-Chr4 | 12134919 | 12137407 | Dispersed/Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | LIM | Aev04g1639 | LIM | 1.8e-09 | CL0167 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aev04g1639 | K09377 | - | gmx:100500501 | 369.007 |