Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g1622 ATGTCTTCCAATCCCAATCCCATTCCTCCACCACCGCCCGATCGCCGCCGTCCCCTCTCTTTCCCGGCGGTGCATCCCTCCGACTCCACCTCTCCCTCCACCCTCCTCTCCTCCCTCCTCACCCTCTCCCAAACCATCCTCCACCTCAGCCCCTTCTTCACCAATCGCCGCAACGCGCGTGAGGCCACGCGCCAAGTCTCCCTCCTCCTCCTCTTCCTCCAAGACCTACGCCCCTCCCTCCTCCCAAACGACGCCGTTTCATCCCTCTCCGACCTCCACTTCGCCTTCCAGAACCTTCACTTCCTCCTACACGATTGTGCTCGCCAAGGCCCACGCCTCTTCATGCTCCTCAAATCCCGCCACGTGGCATCCCTTTTCCGGTCCGTATTTCGCGCCGTCGCAACCGCACTCGAGTCGCTCCCGCTTCAGAAAATCGAAGTTTGTTGGGAAGTTAGAGAGTTAGTTGAGTTAGTTACGAAGCAAGCGAGGAAAGCGAGGTTCGAACTCGACCACGAAGACGAAACCGAATCCGAGAGAGTTTACTCCGTTTTGCATCAATTCGAGAGAGGAACTGAACCTGATTTGAATTCCATGAAGAGAATCCTCAATTACCTTGAGATCAAGACTTGGATCGATTGTAACAGAGAGGTGAAGTTTCTTGAAGAGGAAATGCTCTGTTTTGAGTCCTCTGAATCCGGCGAGGGAGAGGTTTCTTTGTTGAGTAGTTTGATCGGGTTCTTGTGTTACTGCAGAGGAGTGATATTCGAAACGGTTGATTTCACTTCTCTTAAAAATGCCGAGAGTTCCGAAACGAGGCGCGGCGGTGGCACGGAGGTTTTGAGCTGCGAGAGGCGGCCGCCGGAGGATTTCCGGTGTCCAATCTCGCTGGAGATGATGACGGATCCTGTGACTACATCAACCGGCCAGACTTACGATCGAAGCTCGATTCAGAAATGGCTGAAAGGTGGAAACAGAGTGTGTCCAAAAACAGGGGAGAGGCTTTCCACAACAGAGTTGGTTCCAAATACGTCGCTGAAACGCCTAATCCAACAGTTCTGTACCGATAACGGAATCTCACTGGCCAAATCAAGCAGCCGGAGTCGCAGCGGAAGCCTGTCGCGAACCGCGGAGGCCGGTAGCCCTGCCGCCGCTCACGCAGTGCAGTTCCTCTGCTGGTTTCTCGCTCGGAGGCTCGTGTTTGGAACAGAGGAGCAGCAGAACAAGGCTGCGTATGAGGCTAGATTGCTTGCAAGGTCCAATATCTTCAACAGAACGTGTTTGATTGAGGTTGGAGTGGTTCCTCCATTGCTTGATCTCTTAGCTTCTGGTGATACAATAATGCAAGAAAATGCAATGGCTTCATTGTTGAAGCTCTCAAAACATGGCAATGGCCAGAAATGTATAATGGAGAGTAGAGGTTTGGCTCCAATTCTTAGAGTTCTCAAAAGAGGGCTTAGTTTTGAAGCTCGCCAAATTGCTGCTGCCACCATATTTTATCTTTGTTCTGTGGAGGAGTATAGAAGAATCATTGGAGAGAACCCGGATTCAATTCCGGGTTTGGTGGAGATGATCAAAGAAGGAGTGACAACAACAACAACTAAGCCTTGTTTCAATGTTCTGAGTCGGCCACATGGATCAAACGACGTGATACTGCACGGAAAAAAGAATGCAGTAGTTGCGATTTTTGGGCTGCTTTTGCGTTCAGAGAATCATCCCAAGGTGCTTGAATCTGGTGCAGTTCCTGCGCTTGTTGGAGTCTTGTCTTCTTCCTTGGACAAAGCTGATCTTGCGACCGATTGTCTAGCAGTTCTTGCAGCCTTGGCAGAGAGTTCCGAGGGATCACGTGCCGTGTTACAAGCTGAGGCATTGCATTTGATCGTTATGATCCTGCAATCTGTAACATCTCGCGCTGCCAAGGAACATTGTGTTTCGATTTTGATGTCTGTGTGTGTGCATTTTGGTGCAGAAGTTGTGGGTCATCTGGTTGAAGAACCTTCGCTCATGCCTCTGCTCTATTCGATTCTCACTGATGGTACTCCTCATGCTGCAAAGAAAGCAAGGTCCCTTATAAGAGTTCTACAAGAATTCAACGAGCAAAGAGCTTCTGGAATGGCAGGATCATCGGTTTCGCGGCAACAATTGGTTCACTTGAGTTAG 2157 0.5044 MSSNPNPIPPPPPDRRRPLSFPAVHPSDSTSPSTLLSSLLTLSQTILHLSPFFTNRRNAREATRQVSLLLLFLQDLRPSLLPNDAVSSLSDLHFAFQNLHFLLHDCARQGPRLFMLLKSRHVASLFRSVFRAVATALESLPLQKIEVCWEVRELVELVTKQARKARFELDHEDETESERVYSVLHQFERGTEPDLNSMKRILNYLEIKTWIDCNREVKFLEEEMLCFESSESGEGEVSLLSSLIGFLCYCRGVIFETVDFTSLKNAESSETRRGGGTEVLSCERRPPEDFRCPISLEMMTDPVTTSTGQTYDRSSIQKWLKGGNRVCPKTGERLSTTELVPNTSLKRLIQQFCTDNGISLAKSSSRSRSGSLSRTAEAGSPAAAHAVQFLCWFLARRLVFGTEEQQNKAAYEARLLARSNIFNRTCLIEVGVVPPLLDLLASGDTIMQENAMASLLKLSKHGNGQKCIMESRGLAPILRVLKRGLSFEARQIAAATIFYLCSVEEYRRIIGENPDSIPGLVEMIKEGVTTTTTKPCFNVLSRPHGSNDVILHGKKNAVVAIFGLLLRSENHPKVLESGAVPALVGVLSSSLDKADLATDCLAVLAALAESSEGSRAVLQAEALHLIVMILQSVTSRAAKEHCVSILMSVCVHFGAEVVGHLVEEPSLMPLLYSILTDGTPHAAKKARSLIRVLQEFNEQRASGMAGSSVSRQQLVHLS* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g1622 718 Gene3D - 395 554 IPR011989 -
Aev04g1622 718 SMART Ubox_2 289 352 IPR003613 GO:0004842|GO:0016567
Aev04g1622 718 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 360 IPR013083 -
Aev04g1622 718 CDD RING-Ubox_PUB 290 332 IPR045210 -
Aev04g1622 718 PANTHER U BOX DOMAIN-CONTAINING 13 703 - -
Aev04g1622 718 SUPERFAMILY ARM repeat 400 695 IPR016024 -
Aev04g1622 718 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 578 622 IPR000225 GO:0005515
Aev04g1622 718 Pfam U-box domain 287 356 IPR003613 GO:0004842|GO:0016567
Aev04g1622 718 PANTHER OS07G0532750 PROTEIN 13 703 - -
Aev04g1622 718 MobiDBLite consensus disorder prediction 1 19 - -
Aev04g1622 718 Pfam Armadillo/beta-catenin-like repeat 423 451 IPR000225 GO:0005515
Aev04g1622 718 Gene3D - 555 705 IPR011989 -
Aev04g1622 718 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 431 473 IPR000225 GO:0005515
Aev04g1622 718 SMART arm_5 567 609 IPR000225 GO:0005515
Aev04g1622 718 SMART arm_5 461 502 IPR000225 GO:0005515
Aev04g1622 718 SMART arm_5 419 460 IPR000225 GO:0005515
Aev04g1622 718 ProSiteProfiles U-box domain profile. 285 359 IPR003613 GO:0004842|GO:0016567
Aev04g1622 718 SUPERFAMILY RING/U-box 283 359 - -
Aev04g1622 718 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g1622 Aev-Chr4 11949611 11951767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g1622 16 716 U-box Gene Family AT1G10560 38.526 5.23e-158 472
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g1622 - - adu:107491382 987.638