Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g1617 ATGGCCGTTAGGGGCGTCAACTTCAAGTGGTACGATGGGTTCTTCCTGTCTATGCTCGCCACCAGCGTAGTTGTTGTGGCAATCAATTGGAAGCGGTACCATTCTTGTGCATACCCCTTGCACTTATGGATTGTGGTTGACTACACTGCTGTGTTTACTTTCCGGCTATTGATGTTTGTTGACAATGGGCTTGCTTCCGGAATGGGTTTAGATTTTGGAAGGCAGCAGAGACATGCTCGTTTCTGTGGAAGAGTAGTTGTCCTTTCGATTCTTGCATTGCTTCTCTATCCATTTCTCTGGGTTTGGACTATAGTTGGTTCCCTGTGGTTCATAAACGCCAAGACTTGCTTGCCTGGAGAGGGTCAGAAATGGGGCTTCCTCATCTGGTTATTTTTTAGCTACTGTGGACTCCTTTGTATTGCTTGCGTGTCAATGGGGAAGTGGTTGGCAAGAAGACAAGCACATTTGTTACGCTCCCAACAGGGTATCCCTGTATCTGAATATGGAGTTCTAGTTGAAATGATCCAAGTGCCTGATTGGGCATTTGAAGCCGCAGGTCAAGAATCAAGGGGCATGGCCCTTGATGTTGCTGCATATCAACCTGGACTTTACCTTACTCCAGCTCAGACAGAAGCAGTCAAAGCTTTGATCCAGGAACTCCCAAGGTTCAGGCTGAATGCTGTTCCAACTGATTGCAACGAATGCCTAATCTGCTTAGAAGAATTCTGTGTAGGCAATGAGGTTCGTGGTTTGCCTTGCGCTCACAATTTTCATATTGAATGCATTGATAAATGGCTTCAGTTGAATGTGAAATGTCCTCAGTGCCGCTGCTCAGTATTTCCAAATCTTGATCTTAGTGCTCTGTCCAATATCCGTTCTCAATCTGAACAATCTTCTGATAGTGTTGGGACAGCAACCAGATATGTGCGAATCCAACCTTCTAGTCAGAGTTACCTGTGGAGATTACAGGGACTTGTCCGCCCGGTACATGCTGAAGTTGCAGGCCCAGATGGTGAGACAAACAATGCTTTGGAGAATGCTGAAAATGGCGATGCCCCGGTGGCGACTCAAAACGAGTCTAACTGGCAATCAGACCTCTTCTGTTGA 1107 0.4643 MAVRGVNFKWYDGFFLSMLATSVVVVAINWKRYHSCAYPLHLWIVVDYTAVFTFRLLMFVDNGLASGMGLDFGRQQRHARFCGRVVVLSILALLLYPFLWVWTIVGSLWFINAKTCLPGEGQKWGFLIWLFFSYCGLLCIACVSMGKWLARRQAHLLRSQQGIPVSEYGVLVEMIQVPDWAFEAAGQESRGMALDVAAYQPGLYLTPAQTEAVKALIQELPRFRLNAVPTDCNECLICLEEFCVGNEVRGLPCAHNFHIECIDKWLQLNVKCPQCRCSVFPNLDLSALSNIRSQSEQSSDSVGTATRYVRIQPSSQSYLWRLQGLVRPVHAEVAGPDGETNNALENAENGDAPVATQNESNWQSDLFC* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g1617 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 205 281 IPR013083 -
Aev04g1617 368 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Aev04g1617 368 SMART ring_2 235 275 IPR001841 -
Aev04g1617 368 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 361 - -
Aev04g1617 368 MobiDBLite consensus disorder prediction 334 363 - -
Aev04g1617 368 Pfam Ring finger domain 233 276 IPR001841 -
Aev04g1617 368 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 361 IPR044793 GO:0004842|GO:0010182
Aev04g1617 368 MobiDBLite consensus disorder prediction 342 363 - -
Aev04g1617 368 CDD RING-H2_RNF111_like 234 278 - -
Aev04g1617 368 SUPERFAMILY RING/U-box 216 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g1617 Aev-Chr4 11879721 11883235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g1617 58 353 C3H Transcription Factor Family AT3G47990 70.903 1.09e-154 435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g1617 K16284 - gmx:100812016 622.854