LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev04g1592	ATGGAGAACCACCACATGCTATATGGTGGCTTCCATTCTACAACAAACTTCTATTCCGAGCAGTCATCATCAATGGCTGCGCCGCCGCCGCCACCGCCTTCGATTAACAACCTCGTGGCTTCATCATCATCTAAGCAACATCTTCATCATCACGCAGTATCATCATCGTCATCAACAACTAATGCTTTCTTGCAGCAAGATGAAGAAGAAGAAGAGATTATTCGAGCTAAAGTTGCATCTCATCCTCTTTTTCCTCAACTCCTCCACAACTATATCGATTGCCACAAGGTGGGAGCACCCGCAGATATGGTAAAAGTATTAGATGAAGTAAGAGAAGGGAATAATGGTGTATGTCAGATATCTGCCTTCTATGCTGCCGATCCTGAGCTTGACGATTTCATGGAAACGTATTGCAATTTGTTGGGAAAGTACAAATATGAACTTTCAAGGCCTTTTGAGGAGGCAACGGCCTTCCTCAGTGACATGAAATCGCAGCTTAACTCCATCATCTACGAAGGATCATTATCTGGAAAGGGTTTTATTAGGGATGAGAAAAAAGAAACAATAATTGATGAGTGCAAGAAGATAAATAATAATAATAATGAAGATAGAGAACTGAAGGATAATCTTCTACGAAGATATAGCGGATACATTGGAAGCTTGAAGAATGAGTTTTCCAAAAACAAGAAGAAAGAAAGACTTCCAAATGAAGCAAAAGAAATTTTACAAGTATGGTGGGATATTCACTTCAAATGGCCATACCCTACGGATGCAGATAAGGTTGCCCTAGCTGAATGGACAGGATTGGACCAGAAGCAGATAAACAATTGGTTTATAAACCAAAGGAAGCGCCATTGGAAACCATCTGAGGAAATTCAAGCTGCAGTTTTTGCTAGTGATTATATCGCTCATGATGAGTAG	921	0.405	MENHHMLYGGFHSTTNFYSEQSSSMAAPPPPPPSINNLVASSSSKQHLHHHAVSSSSSTTNAFLQQDEEEEEIIRAKVASHPLFPQLLHNYIDCHKVGAPADMVKVLDEVREGNNGVCQISAFYAADPELDDFMETYCNLLGKYKYELSRPFEEATAFLSDMKSQLNSIIYEGSLSGKGFIRDEKKETIIDECKKINNNNNEDRELKDNLLRRYSGYIGSLKNEFSKNKKKERLPNEAKEILQVWWDIHFKWPYPTDADKVALAEWTGLDQKQINNWFINQRKRHWKPSEEIQAAVFASDYIAHDE*	307

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev04g1592	306	SMART	KNOX1_2	72	116	IPR005540	GO:0003677\|GO:0005634
	Aev04g1592	306	Pfam	Homeobox KN domain	245	284	IPR008422	GO:0003677\|GO:0006355
	Aev04g1592	306	Pfam	ELK domain	205	226	IPR005539	GO:0003677
	Aev04g1592	306	SUPERFAMILY	Homeodomain-like	227	293	IPR009057	-
	Aev04g1592	306	SMART	KNOX2_2	120	171	IPR005541	GO:0003677\|GO:0005634
	Aev04g1592	306	MobiDBLite	consensus disorder prediction	19	67	-	-
	Aev04g1592	306	PANTHER	HOMEOBOX PROTEIN KNOTTED-1-LIKE 6	40	300	-	-
	Aev04g1592	306	MobiDBLite	consensus disorder prediction	37	64	-	-
	Aev04g1592	306	ProSiteProfiles	'Homeobox' domain profile.	225	288	IPR001356	GO:0003677
	Aev04g1592	306	SMART	HOX_1	227	292	IPR001356	GO:0003677
	Aev04g1592	306	CDD	homeodomain	229	289	IPR001356	GO:0003677
	Aev04g1592	306	ProSiteProfiles	ELK domain profile.	205	225	IPR005539	GO:0003677
	Aev04g1592	306	ProSitePatterns	'Homeobox' domain signature.	263	286	IPR017970	GO:0000981\|GO:0006355
	Aev04g1592	306	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	40	300	-	-
	Aev04g1592	306	SMART	ELK_2	205	226	IPR005539	GO:0003677
	Aev04g1592	306	Coils	Coil	193	213	-	-
	Aev04g1592	306	Pfam	KNOX2 domain	126	169	IPR005541	GO:0003677\|GO:0005634
	Aev04g1592	306	Pfam	KNOX1 domain	74	112	IPR005540	GO:0003677\|GO:0005634
	Aev04g1592	306	Gene3D	-	222	296	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev04g1592	Aev-Chr4	11586671	11592856	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aev04g1592	10	292	Homeobox Transcription Factor Family	AT1G70510	43.854	9.88e-77	235

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-KNOX	Aev04g1592		KNOX2	2.2e-21	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev04g1592	-		-	aprc:113874840	290.812