Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g1533 ATGAATGCAATTGATCAGTGTTGGAGATGGAATCCTGAATGGAGGAGGCATAGATCACAACTTGCTAATTGCTCTGTGGGATATGCTGGCAAGATGATGAACAACTTAGGCAATGATCTCATTTATTATAAGGTTACGGATCCCTCTGATGACCCAATAAATCCTAAGTTTGGAACTTTGAGGTATGGAGCTTCGGTGATTCAAGGAAAAGTTTGGATCAAATTTCAGAGGGATATGCATATTACACTTGTGAAGCCCCTTCTTGTTAGTAGTTTCACCACCATTGATGGTCGTGGTGTAAATATTCATATTGCTAACAATGCTTGCTTGATGATCTTTAAGGCTACGAACATAATCATCCATAGCATTCGAGTTCATCATTGCAAAGCTCAAGCCCCTGGATTGGTGATGGGTCCTAATGGAAAGGTAATTTCTTTGGGTCAAGTGGATGGAGATGCAATCAGACTCGTTACAGCTTCAAAGATTTGGATCGATCATAATACTCTTCATGATTGTGAAGATGGTCTTCTTGATGTCACACGTGGTTCGACTGATGTGACTGTCTCTAATAATTGGTTCAGAAATCAAAATAAGGTTATGCTTCTTGGCCATGATGATGGGTATGTCAGAGACCAAAATATGAAAGTTACTGTTGTCTACAACCATTTTGGACCTAATTGCAACCAACGCATGCCAAGGATTCGCCATGGATATGCACATGTAGCCAACAATCTTTACCAAGGATGGGTGCAATATGCCATCGGTGGAAGCATGGAACCTAGCCTTAAAAGTGAAGCTAATCTCTTCATAGCACCAACATCCGGGAGCAAGGAGGTAACATGGAGAAAAAGTAGTCATCAAAATGGAAACAATTGGGAATTTCACTCAGTAAGAGATGTTTTTGAAAATGGAGCATTCTTTAAAGCAACAAAAGGTGGACGTGTGCCAAAGCCAAATTACAACATGGAACAAAGATTCAAAGTGGCTGATGCTATATCTGTGAGATCATTGACAAGTTCATCCGGTGCATTAAAATGCACCAAAACCTCTATATGTTGA 1059 0.4013 MNAIDQCWRWNPEWRRHRSQLANCSVGYAGKMMNNLGNDLIYYKVTDPSDDPINPKFGTLRYGASVIQGKVWIKFQRDMHITLVKPLLVSSFTTIDGRGVNIHIANNACLMIFKATNIIIHSIRVHHCKAQAPGLVMGPNGKVISLGQVDGDAIRLVTASKIWIDHNTLHDCEDGLLDVTRGSTDVTVSNNWFRNQNKVMLLGHDDGYVRDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWVQYAIGGSMEPSLKSEANLFIAPTSGSKEVTWRKSSHQNGNNWEFHSVRDVFENGAFFKATKGGRVPKPNYNMEQRFKVADAISVRSLTSSSGALKCTKTSIC* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g1533 352 SUPERFAMILY Pectin lyase-like 23 346 IPR011050 -
Aev04g1533 352 Pfam Pectate lyase 89 269 IPR002022 -
Aev04g1533 352 PRINTS Pollen allergen Amb family signature 24 41 IPR018082 -
Aev04g1533 352 PRINTS Pollen allergen Amb family signature 150 171 IPR018082 -
Aev04g1533 352 PRINTS Pollen allergen Amb family signature 252 271 IPR018082 -
Aev04g1533 352 PRINTS Pollen allergen Amb family signature 86 102 IPR018082 -
Aev04g1533 352 PRINTS Pollen allergen Amb family signature 230 249 IPR018082 -
Aev04g1533 352 PRINTS Pollen allergen Amb family signature 292 316 IPR018082 -
Aev04g1533 352 PRINTS Pollen allergen Amb family signature 323 346 IPR018082 -
Aev04g1533 352 PANTHER PECTATE LYASE 18-RELATED 1 349 IPR045032 GO:0030570
Aev04g1533 352 PANTHER PECTATE LYASE 1 349 - -
Aev04g1533 352 SMART amb_all 78 275 IPR002022 -
Aev04g1533 352 Gene3D - 1 345 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g1533 Aev-Chr4 11036294 11038709 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g1533 32 279 Polysaccharide Lyase AT5G09280 71.371 9.16e-142 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g1533 K01728 - gmx:100780437 628.632