Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g1515 ATGAGAAGCACTACTTCACTCTTCACTCTGTTTTTCTTTCTCTTCTCTGTTCTCTCCCCTGCCTTCGTTTCCTCTTCCCCTGTTCAAGACCCTGAACTGGTAGTTCTAGAGGTTAACAGGAAAATCAATGAGTCTATTGCTAGAAGGAGTTTAGCTAGTAGGAGGAGCTTGGGGTACCTCTCATGTGGGAGTGGCAACCCAATTGACGATTGTTGGAGGTGTGACCCCAATTGGGAGAACAACAGGCAAAGGCTAGCCGATTGTGCAATTGGGTTCGGCAAGAACGCAATCGGCGGTAGGGACGGCAAGATCTACGTGGTGGATAACTCCGGCGATGATAATCCTGTAAACCCTAAACCCGGAACCCTAAGACATGCAGTGATCCAAGACGAGCCACTGTGGATTATATTCGCTAGGGATATGACGATCACACTAAAAGAAGAACTCATAATGAACTCGTACAAGACAATTGATGGAAGAGGAGCTAGTGTGCACATTTCGGGTGGTCCATGCATAACAATACAATATGTAACAAATGTGATCATACATGGGATTCACATCCATGATTGCAAGCAAGGTGGGAATGCTATGGTGCGTGACTCCCCTAGGCACTACGGGTGGAGGACCGTATCGGACGGCGACGGCGTGTCGATATTCGGTGGGAGCCACATTTGGGTGGACCATTGCTCATTGTCGAATTGCAAGGATGGGTTGATTGATGCAATTCATGGGTCCACGGCTATCACTATATCCAACAATTACATGACACACCATGATAAGGTCATGTTGTTAGGTCATAGCGATTCATACACTCAAGACAAGAACATGCAAGTCACTATTGCTTTTAACCACTTTGGTGAAGGCCTCATTCAAAGAATGCCAAGGTGTAGGCATGGATACTTCCATGTGGTGAATAATGACTACACTCACTGGGAAATGTATGCTATTGGTGGCAGTGCTAATCCCACCATTAACAGCCAAGGCAACAGATTTGTTGCTCCCGATGACAGATTCAGCAAAGAGGTGACAAAGCATGAGGATGCAGGGGAGGAAGAATGGAAGAGTTGGAATTGGAGATCAGAAGGGGATTTGCTAGTAAATGGTGCATTTTTCACTGCATCGGGTGCTGGAGCCTCCTCTAGCTATGCAAGAGCTTCTAGCTTGAGTGCTAGACCCTCTTCCTTGGTTGCTTCCATCACTATTGCTGCTGGTGCACTTCAATGCAAGAAAGCTTCACCTTGCTAG 1245 0.4675 MRSTTSLFTLFFFLFSVLSPAFVSSSPVQDPELVVLEVNRKINESIARRSLASRRSLGYLSCGSGNPIDDCWRCDPNWENNRQRLADCAIGFGKNAIGGRDGKIYVVDNSGDDNPVNPKPGTLRHAVIQDEPLWIIFARDMTITLKEELIMNSYKTIDGRGASVHISGGPCITIQYVTNVIIHGIHIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGGSHIWVDHCSLSNCKDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDDRFSKEVTKHEDAGEEEWKSWNWRSEGDLLVNGAFFTASGAGASSSYARASSLSARPSSLVASITIAAGALQCKKASPC* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g1515 414 PANTHER PECTATE LYASE 8 411 - -
Aev04g1515 414 Gene3D - 65 407 IPR012334 -
Aev04g1515 414 SMART amb_all 140 337 IPR002022 -
Aev04g1515 414 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Aev04g1515 414 PRINTS Pollen allergen Amb family signature 112 137 IPR018082 -
Aev04g1515 414 PRINTS Pollen allergen Amb family signature 148 164 IPR018082 -
Aev04g1515 414 PRINTS Pollen allergen Amb family signature 88 105 IPR018082 -
Aev04g1515 414 PRINTS Pollen allergen Amb family signature 385 408 IPR018082 -
Aev04g1515 414 PRINTS Pollen allergen Amb family signature 212 233 IPR018082 -
Aev04g1515 414 PRINTS Pollen allergen Amb family signature 292 311 IPR018082 -
Aev04g1515 414 PRINTS Pollen allergen Amb family signature 356 380 IPR018082 -
Aev04g1515 414 PANTHER PECTATE LYASE 18-RELATED 8 411 IPR045032 GO:0030570
Aev04g1515 414 Pfam Pectate lyase 149 331 IPR002022 -
Aev04g1515 414 SUPERFAMILY Pectin lyase-like 66 405 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g1515 Aev-Chr4 10925513 10929142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g1515 1 414 Polysaccharide Lyase AT5G63180 80.048 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g1515 K01728 - gmx:100779940 706.057
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g1942 01 24282139 24284422 Aev04g1515 04 10925513 10929142 ECH
Aev04g1515 04 10925513 10929142 Aev04g1515 04 10925513 10929142 ECH