Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g1507 ATGGAACCTTCTGAATCAGAATCAGTTGGTTCCTCCACCATCATCACAGACCCACTATTGGATTCTCAGTGTGAACCTTCTTCCCATGTTCCCAATCATGAACACGATCCTCAAGCCTCAGAATCAGATCCCAGTGACAAGTTGGATTTGAAGGATGGGAGTGATGGAAGCCATGAACTTGGTGGTGAATTCCATGACAAGTTGAACTTGAAGAATGAGGGTGAAGGGGTTGGTGAAACTGAGAAGGAAGTTTCAAATTTTGAAGCTGATGCTGGGGAATTGGGTGGTGAGTTCCATGACAAGCTGGATTTGAAGGGTGAAGGTGAATGTGAAGGGGATGGTGAAACTGAGAAGAAAGATTCAATTTTTGAAGCTGGTGATGGGGATTTGGGGGGTGAAGGTGATGCCCAAGAAGCTGGTCAGGGTCAAGGGAGTGATGATGATTGGAACTGTGATGAGGGGTATGGTTGGAATGAGAATGTCAAAGAGAGTGAGGATGATAAGGTGAGTGGAGATAATGATAATGATGATGGTGATAGTGATGGGGTAGAAGGTGATGAAGTGGAGAAGAAGGAAGGAAGAAGAAGTGTTAGAGCTCAGCAGTACCCATTGAGGCCTGAAGCTGAAGATTGTGCATTCTATCTTAAGACTGGGTCTTGCAAGTTTGGATTCAATTGCAAGTTTAATCACCCAGTTAAGAGGAAAACCCAGGCTGTTAAAGAGAAGGTGGAAGAACGAGATGAACCGGCAGAAAGATCAGGCCAGATAGAATGCAAGTACTATTTAAGGTCTGGGGGTTGTAAGTTTGGAAAAGCTTGTAAATTTAATCACACAAGAGTAAAGTCTTCAGCAGCAGTCTCTTTCGAGCTTAATTTTCTTGGCCTGCCTATTCGTTTGGGAGAGAAAGAGTGTCCCTATTACATGCGCACTGGCTCTTGTAAGTTTGGAGCAAACTGCAAGTTTAATCATCCTGATCCTACATCTGTTGGAGGAGGAAGTGATTTTCCTTTAGCGTATGGTAATGGCAGTTCTATTTCATCACAAGGTTTATCCCAATCAACTGTACCCTCGTGGTCTTCTCCAAAAACATTAAATGAAACTGCTCACTTTGTGCCAATGATGCTTTCACCTACTCAAGCAGTCTCTCCCCCTAGTTCTGATTGGAATGGATATCAGGCACCTGTATATCAATCTGAGAGAGGAATGCGTCCACCTTCTGCTTATGTCATGAACAACCCAGCAAATCAAAGAAATGTTTATTTGCACAACCAAAAGCAAATGTCAGTCGAAGAGTTTCCAGAAAGGCCCGGTGAACCCGAGTGCAGCTACTTCTTAAAAACTGGGGATTGCAAGTTTAAATCTAATTGTAAATTTCACCATCCAAAGAACCGGACGGCAAGATTACCTCCGTGCAACCTCAGTGACAAGGGTCTGCCTCTGAGACCGGAACAGAATGTATGCACTCATTACAGCAGGTATGGAATATGCAAATTTGGACCATCTTGTAAGTATGACCACCCAATTCACCCATCACCCTCAACTCTTGATGAACTTGATCAACAAACATCTTACACAAACTCAGCTTCCGTTGAAGCGGCCGAGATGGGTGGGAGTGCAGGTGCTAATGATGCGACAATTCGGCAGCCCGTGTGA 1653 0.4422 MEPSESESVGSSTIITDPLLDSQCEPSSHVPNHEHDPQASESDPSDKLDLKDGSDGSHELGGEFHDKLNLKNEGEGVGETEKEVSNFEADAGELGGEFHDKLDLKGEGECEGDGETEKKDSIFEAGDGDLGGEGDAQEAGQGQGSDDDWNCDEGYGWNENVKESEDDKVSGDNDNDDGDSDGVEGDEVEKKEGRRSVRAQQYPLRPEAEDCAFYLKTGSCKFGFNCKFNHPVKRKTQAVKEKVEERDEPAERSGQIECKYYLRSGGCKFGKACKFNHTRVKSSAAVSFELNFLGLPIRLGEKECPYYMRTGSCKFGANCKFNHPDPTSVGGGSDFPLAYGNGSSISSQGLSQSTVPSWSSPKTLNETAHFVPMMLSPTQAVSPPSSDWNGYQAPVYQSERGMRPPSAYVMNNPANQRNVYLHNQKQMSVEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRTARLPPCNLSDKGLPLRPEQNVCTHYSRYGICKFGPSCKYDHPIHPSPSTLDELDQQTSYTNSASVEAAEMGGSAGANDATIRQPV* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g1507 550 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 60 550 - -
Aev04g1507 550 ProSiteProfiles Zinc finger C3H1-type profile. 252 280 IPR000571 GO:0046872
Aev04g1507 550 Gene3D - 243 329 - -
Aev04g1507 550 MobiDBLite consensus disorder prediction 28 126 - -
Aev04g1507 550 SUPERFAMILY CCCH zinc finger 479 507 IPR036855 GO:0046872
Aev04g1507 550 SUPERFAMILY CCCH zinc finger 257 279 IPR036855 GO:0046872
Aev04g1507 550 ProSiteProfiles Zinc finger C3H1-type profile. 435 463 IPR000571 GO:0046872
Aev04g1507 550 Gene3D - 480 530 - -
Aev04g1507 550 ProSiteProfiles Zinc finger C3H1-type profile. 481 509 IPR000571 GO:0046872
Aev04g1507 550 Gene3D - 389 470 - -
Aev04g1507 550 Gene3D - 182 242 - -
Aev04g1507 550 SUPERFAMILY CCCH zinc finger 299 325 IPR036855 GO:0046872
Aev04g1507 550 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 209 231 IPR000571 GO:0046872
Aev04g1507 550 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 257 277 IPR000571 GO:0046872
Aev04g1507 550 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 437 462 IPR000571 GO:0046872
Aev04g1507 550 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 485 507 IPR000571 GO:0046872
Aev04g1507 550 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 301 324 IPR000571 GO:0046872
Aev04g1507 550 SUPERFAMILY CCCH zinc finger 204 233 IPR036855 GO:0046872
Aev04g1507 550 MobiDBLite consensus disorder prediction 1 201 - -
Aev04g1507 550 ProSiteProfiles Zinc finger C3H1-type profile. 205 233 IPR000571 GO:0046872
Aev04g1507 550 PANTHER PROTEIN PHOSPHATASE RELATED 60 550 - -
Aev04g1507 550 MobiDBLite consensus disorder prediction 184 198 - -
Aev04g1507 550 SMART c3hfinal6 205 232 IPR000571 GO:0046872
Aev04g1507 550 SMART c3hfinal6 298 325 IPR000571 GO:0046872
Aev04g1507 550 SMART c3hfinal6 481 508 IPR000571 GO:0046872
Aev04g1507 550 SMART c3hfinal6 252 279 IPR000571 GO:0046872
Aev04g1507 550 SMART c3hfinal6 435 462 IPR000571 GO:0046872
Aev04g1507 550 SUPERFAMILY CCCH zinc finger 440 464 IPR036855 GO:0046872
Aev04g1507 550 MobiDBLite consensus disorder prediction 1 27 - -
Aev04g1507 550 ProSiteProfiles Zinc finger C3H1-type profile. 298 326 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g1507 Aev-Chr4 10843586 10847298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g1507 202 546 C2H2 Transcription Factor Family AT3G02830 38.402 2.49e-77 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aev04g1507 zf-CCCH 7.5e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g1507 - - gmx:100809906 603.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev04g1507 04 10843586 10847298 Aev04g1507 04 10843586 10847298 ECH