Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g1419 ATGGACGGTGGAGCACAGTACAGGCCTCGCTCCGTCGAGGAAGTTTTCCGTGACTTCAAGGGTCGCAGAGCTGCCATGGTCAAAGCTCTCACTAGTGATGTTGAAGAGTTTTACCAGCAGTGCGATCCAGACAAGGAGAATCTATGTCTGTATGGACACCCCACTGAACAGTGGGAAGTTAACTTACCTGCCGAAGAAGTTCCTCCCGAACTCCCTGAGCCTGCATTGGGCATAAACTTTGCTAGGGATGGGATGCAAGAAAAGGACTGGCTTACTTTAGTTGCTGTTCACAGTGACGCATGGTTAATTGCAGTGGCTTTCTACTTTGGGGCAAGATTTGGTTTTGATAAAGCTGACAGGAAACGATTGTTCACTATGATTAATGATCTGCCAACAATATTTGAGGTTGTGACTGGAACCACAAAGAAACAGACGAAGGAAAAGTCATCAGTTTCAAACACCAGCAGCAAATCAAAGTCCGGTTCAAAAGGGCGAGGATCTGAACCCGTGAAGTATTCAAAGCAAACGAAGGATGAGGATGAGGCTATGGACGAAGAAGATGAGGAGCACGGGGAGACCTTGTGTGGTGCATGTGGCGAGCTCTATGCATCTGACGAGTTTTGGATTTGCTGCGACATATGTGAGAAGTGGTTCCATGGAAAATGTGTGAAGATCACTCCTGCTCGTGCAGAGCACATCAAGCAGTACAAGTGCCCATCATGCAGCAACAAGAGGGCACGACCCTGA 747 0.4793 MDGGAQYRPRSVEEVFRDFKGRRAAMVKALTSDVEEFYQQCDPDKENLCLYGHPTEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLTLVAVHSDAWLIAVAFYFGARFGFDKADRKRLFTMINDLPTIFEVVTGTTKKQTKEKSSVSNTSSKSKSGSKGRGSEPVKYSKQTKDEDEAMDEEDEEHGETLCGACGELYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g1419 248 ProSiteProfiles Zinc finger PHD-type profile. 192 244 IPR019787 -
Aev04g1419 248 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Aev04g1419 248 CDD PHD_AL_plant 194 244 IPR044104 -
Aev04g1419 248 Pfam PHD-finger 195 244 IPR019787 -
Aev04g1419 248 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 3 248 - -
Aev04g1419 248 MobiDBLite consensus disorder prediction 144 186 - -
Aev04g1419 248 ProSitePatterns Zinc finger PHD-type signature. 195 241 IPR019786 -
Aev04g1419 248 SUPERFAMILY FYVE/PHD zinc finger 184 245 IPR011011 -
Aev04g1419 248 MobiDBLite consensus disorder prediction 144 163 - -
Aev04g1419 248 PANTHER CPG BINDING PROTEIN 3 248 IPR045104 GO:0006355|GO:0042393
Aev04g1419 248 SMART PHD_3 194 242 IPR001965 -
Aev04g1419 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 184 243 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g1419 Aev-Chr4 9961698 9965298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g1419 1 247 Alfin-like Transcription Factor Family AT3G42790 71.713 3.06e-119 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Aev04g1419 Alfin 1.3e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g1419 - - gmx:100500110 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev04g1419 04 9961698 9965298 Aev04g1419 04 9961698 9965298 ECH