Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g1337 ATGGCCAACGCGGAAGTGAAAGCAGTGGTTCCCGAATCAGTGTTGAAGAAGCAGAAGAGGAGTGAGGAGTGGGCTCTTGCGAAAACCCAGGAGCTTGAGGCCGCGAAGAAGAAGAGGGTCGAAACGAGGAAATTGATCTTCAACAGGGCCAAACAGTACGCAAAGGAATACGATGAGCAGGACAAGGAGTTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGCGGGTTTTATGTCGACCCTGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGGTATCAATGCCATAGACCCAAAAACAAGGAAGATTTTGCAGCTTCTGCGTTTGAGACAGATCTTCAATGGTGTCTTTCTCAAGGTTAACAAAGCAACCATTAATATGCTTCACAGGGTGGAGCCTTATGTCACCTATGGGTACCCTAACTTGAAGAGTGTAAAAGAACTTATTTACAAGAGGGGCTTTGGAAAAGTTGATAAGCAGAGAATTCCTTTGACAGACAACTCTATCATCGAACAGACTTTGGGGAAGCACGGAATTATTTGCGTCGAAGATCTGATCCATGAGATTTTGACTGTTGGACCTCACTTCAAAGAGGCAAACAACTTTCTGTGGCCATTCAAGCTCAAGGCTCCCCTTGGTGGTCTGAAGAAGAAGAGGAACCATTATGTTGAAGGTGGTGATGCTGGCAATAGGGAAGACCATGGCAGAAGCAGTGGTCATAACCGCCATGAAACACGCCTCCCACCACGAGCCATCCTCTGTCGTCCTCACCTTGGTCCACCATTTGCAGAATGGCTGTGGCAAGATGCAGATCCGTGCACCTCCGACCTCTCCTTCTTCCTCGCGTTGTTTCTGTCCTCTACTGTGCTTGCCGTCGTGGTGCTGCTGGTTATGTTCAGCTTCCCTGTCTGCGCCTATGTTCTTTCAGATGTTGCGTTATCTGCAGAAGTTGCGCCTCCGTTCTCCTCCGCATCGTCTGTCGTCGCTGGCTTCGGCTCCTCTGTTCTTTGCT 1015 0.4887 MANAEVKAVVPESVLKKQKRSEEWALAKTQELEAAKKKRVETRKLIFNRAKQYAKEYDEQDKELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTRKILQLLRLRQIFNGVFLKVNKATINMLHRVEPYVTYGYPNLKSVKELIYKRGFGKVDKQRIPLTDNSIIEQTLGKHGIICVEDLIHEILTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNREDHGRSSGHNRHETRLPPRAILCRPHLGPPFAEWLWQDADPCTSDLSFFLALFLSSTVLAVVVLLVMFSFPVCAYVLSDVALSAEVAPPFSSASSVVAGFGSSVLC 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g1337 338 Gene3D - 85 191 IPR036919 -
Aev04g1337 338 ProSitePatterns Ribosomal protein L30 signature. 104 136 IPR018038 -
Aev04g1337 338 CDD Ribosomal_L7_archeal_euk 85 234 IPR035808 -
Aev04g1337 338 SUPERFAMILY Ribosomal protein L30p/L7e 85 234 IPR036919 -
Aev04g1337 338 Pfam Ribosomal L30 N-terminal domain 10 81 IPR012988 -
Aev04g1337 338 Coils Coil 50 70 - -
Aev04g1337 338 MobiDBLite consensus disorder prediction 224 245 - -
Aev04g1337 338 Pfam Ribosomal protein L30p/L7e 86 136 IPR016082 -
Aev04g1337 338 PANTHER 60S RIBOSOMAL PROTEIN L7 4 235 IPR039699 -
Aev04g1337 338 PANTHER 60S RIBOSOMAL PROTEIN L7-RELATED 4 235 - -
Aev04g1337 338 TIGRFAM uL30_euk: 60S ribosomal protein uL30 11 235 IPR005998 GO:0000463|GO:0003735|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g1337 Aev-Chr4 9119423 9124584 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g1337 1 234 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 86.752 6.75e-151 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g1337 K02937 - gmx:100306213 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev04g1337 04 9119423 9124584 Aev04g1337 04 9119423 9124584 ECH