Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g1328 ATGGCGACGGAGCAGACAAAGCTCAGCGTCCTATGCAGCCTATTCAACTGGACGCAGCGAGCCAAGTCTCCGCCCAATAAGCGCGCTAAGTTCCGCAAGTTCCTCGATTCTTTCTGCTCCGACCGCCACTTCTTCCCCGCCATTCGCCTCCTCCTCCCTAACCTCGACCGCGAGCGTGGCTCCTATGGCCTCAAGGAGTCCGTTCTCGCAACCTCCCTCATCGACGCCCTCGGCATGTCCAGGGACTCCGACGACGCCAAACGCCTCATCAATTGGCGCAAAGGCGGCGCCTCCGCCGGCTCCAATGCCGGTAATTTCGCCCTCGTTGCTTCCGAGGTGCTGCAGCGAAGGCAAGGGACAGCTTCGGGCGGATTGACAATAAAGGAGGTAAATGACTTACTTGATCAGCTGGCTTCCAGTGAAAACAGGGCTGAGAAGACTTCGGTTCTTTCTACGCTTATCCAAAAGACAAATGCACAGGAAATGAAGTGGATTATCATGATAATCCTCAAAGATCTAAAGCTCGGAATTAGTGAAAAAAGCATTTTTCATGAATTCCATCCAGATGCTGAAGACTTGTTTAATGTCACATGTGACTTAAAATTGGTTTGTGAAAAACTGAGGGATCGAAATCAACGTCATAAGCGGCAGGATATTGAAGTAGGAAAAGCTGTGCGCCCTCAATTAGCTAAGAGAGTTGCCAATGCAAATGAAGCATGGAAGAAGCTTCATGGGAAGGAAGTGGTTGTTGAGTGCAAATTTGATGGGGACCGCATTCAAATTCATAAAAATGGAACAGAGATACATTTCTTCTCAAGGAACTTTCTTGATCATTCTGAATATGCACATGCTATGTCCGAACTCATAATACAAAACATTCTTGTAGATAGGTGTATACTTGATGGTGAAATGTTGGTCTGGGACACTTCTTTGAATCGTTTTGCTGAGTTTGGCTCAAACCAGGAAATAGCCAAGGCAGCAAGGGATGGACTTGATAGTGATAGACAGTGGCTAGATGTCGCATTTGATATCCTTTATTTTGGAGATACTAGTGTAATTCACCAAACTTTGAAGGAACGACATGTGATTCTCCGTAAAGTTGTGAGACCATTGAAGGGTCGCTTGGAAATTTTAGTACCTAATGGTGGTCTTAACAGTCATTGCTCTTCTGATGAACCATGCTGGTCATTTCTTGCTCATAATGTGGATGAAGTTGAGAGATTTTTCAAAGAAACAATAGAGAATAGAGACGAGGGAATTGTTGTGAAGGACCTTGGTTCCAAATGGGAACCTAGTGATCGCAGCGGAAAGTGGCTAAAATTGAAGCCTGAGTACGTTCAAGCTGGTTCTGATTTGGATGTACTTATCATAGGTGGCTATTATGGCACTGGAAGACGTGGTGGAGAGGTTGCTCAGTTTTTAGTGGGCCTTGCAGAGCGTCCATCCCCAAATATGCATCCGAAGCGATTTATCTCCTTTTGCAGAGTTGGTACTGGACTTTCTGAGGATGAGCTTGATGCGGTAGTAACCAAACTAAAACCTTACTTCAAAAAGTATGAATATCCGAAGAAGAGGCCACCGAGTTTTTATCAAGTTACTAATCATTCAAAAGAAAGACCTGATGTGTGGGTTGAGAGCCCTGAGAAATCGATTATTCTGTCTATAACCAGTGATATCCGAACTATAGAATCTGAGGCATTTGCTGCTCCCTACAGCCTGAGATTTCCTCGGATTGACAGGGTGAGATATGACAAAGCTTGGCATGAATGCCTTGATGTGCAATCATTCATAGAACTAGTGCAGTCTAGTAATGGTACTACTCAGAGAGATACAGGCAGCAAACAGGATAGTAAACCAAGACGAGTGAAGTCCACTACAAGAGGAGAAAAGAAAAGCATGTCCATTGTTCCTTCTCATTTGATTCAGACTGATGTTTCCGCTGTTAAGGGGGGCTCCTTGATATTTTCTAACATGATGTTTTACTTTGTTAATGTTCCTCCATCTCGTTCTCTTGAGTCCTTGCACAAAATGATTGCTGAGAATGGGGGAACCTTCTCTATGAATTTGAATAAGTCAGTTACTCATTGCATTGCAGCTGACAGCAAAGGGTTCAAATTCGAAGCTGCAAAACGTCATGGTGATATCATTCATTATTCGTGGGTATTAGATTGCTGTGCACAAAAGAAGCTTGTCAGCTTACAGCCGAAGTACTTCCTCTTCATATCTGAAGGGACAAAGAAGAAATTACAAGAAGAAATTGACGAGTTCTCAGATTCTTACTTCTTGGATCTTGATCTTGGAGACCTCAAACAGCTCTTAAGCAATATTCGTAGGTCAGAAGACATCAGCACAGTTGATCATTACAGGAAGAAATACTGCCCAAAGAATAAGTGGTCTTTCTTTATTGGATACTCCATTTATTTCCACATTGCAGTACCATCATTGGAAGGAGATTGGGAAGTTCAATTGGGACTTGCTTTGAGAAGATTCAAGCTTGAGGTTCTCATGAGTGGTGGAAATGTTACAGATAATCTTACTAGTGCAACCCATTTAGTTATCTTGTCAGTGCCAGGACATGATACTGAATTTGATGAAATACAGAGAAGTTTTACTTCAGTAGAAAGAAGATCCCTCCAGAGCAAGAGGTTGCATATAGTTAAATCCCAGTGGTTTGAAGATTGTTTGGACAGTAACAGAAGATTACCAGAAGAAAGTTATAGCTTGAGGCCCAGTGTGATAGACGAGTTGACTGATGAAAATCGTGAACACGACCTGGCGTTGGACGAGGCCCGAATGGGAGGAGACAATGTAGAAGACCAAAATGTATCTCTCTCTGACAAGGAAAGTAAACAGAGAAGTTCAGAAGCTTCTCATGAAGCCAACATGGCCGTGGTATCCAAACAGAAGGTTGGCCAAAGAAAGAGAGGAAGACCTGCAGGGAGAGGTACTAAAAATGTTAAAACTGCTGCCAACAAGTCTCAAAGAACGCAACCACGCACCATGCGAAAGTGCGCTAAAATATCCGAGTATGAGTCAGACGAAAATGATTCTGGTGACAAAGAACTGCATGTGCAAGTGACCGACACGAGTGACAGGAGAGAAGAAGATCTCGATCTTCACAAAAGACATTCAGAACCTCAGAAGACTAAGAAAGAGTCTAATGTCCAAGTTTCTGAAACAGTTGAAAGTTCTGAAAGAAACAAGGCATTGCAAGAAGATATGAAGGATAGTAGTGAACCTGAAAGAATGTTTGTTCCAGAAGTAGAAATGACTGATAAAAGTAGGCACAATGAACAAACCAGTCAAGTGACTAATAAACTTGAAATGTGGGAAGATCCAGTGCAGGCCATGTTATTTAATATGATTCCTAGCCTTGCCACAAAGAAAGTTGAGGAAACTAAGAACCATGACATTGCAGAAGAGAAGCCAGCAGAAATGACTAATGCTGAGGCAGAGCCTTCAACTAGAAAGAAAAAGAAAGTTAGCTACAAGGAACTTGCCAATGAGCTGCTTAAAGATTGGTAG 3525 0.4292 MATEQTKLSVLCSLFNWTQRAKSPPNKRAKFRKFLDSFCSDRHFFPAIRLLLPNLDRERGSYGLKESVLATSLIDALGMSRDSDDAKRLINWRKGGASAGSNAGNFALVASEVLQRRQGTASGGLTIKEVNDLLDQLASSENRAEKTSVLSTLIQKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANANEAWKKLHGKEVVVECKFDGDRIQIHKNGTEIHFFSRNFLDHSEYAHAMSELIIQNILVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLDSDRQWLDVAFDILYFGDTSVIHQTLKERHVILRKVVRPLKGRLEILVPNGGLNSHCSSDEPCWSFLAHNVDEVERFFKETIENRDEGIVVKDLGSKWEPSDRSGKWLKLKPEYVQAGSDLDVLIIGGYYGTGRRGGEVAQFLVGLAERPSPNMHPKRFISFCRVGTGLSEDELDAVVTKLKPYFKKYEYPKKRPPSFYQVTNHSKERPDVWVESPEKSIILSITSDIRTIESEAFAAPYSLRFPRIDRVRYDKAWHECLDVQSFIELVQSSNGTTQRDTGSKQDSKPRRVKSTTRGEKKSMSIVPSHLIQTDVSAVKGGSLIFSNMMFYFVNVPPSRSLESLHKMIAENGGTFSMNLNKSVTHCIAADSKGFKFEAAKRHGDIIHYSWVLDCCAQKKLVSLQPKYFLFISEGTKKKLQEEIDEFSDSYFLDLDLGDLKQLLSNIRRSEDISTVDHYRKKYCPKNKWSFFIGYSIYFHIAVPSLEGDWEVQLGLALRRFKLEVLMSGGNVTDNLTSATHLVILSVPGHDTEFDEIQRSFTSVERRSLQSKRLHIVKSQWFEDCLDSNRRLPEESYSLRPSVIDELTDENREHDLALDEARMGGDNVEDQNVSLSDKESKQRSSEASHEANMAVVSKQKVGQRKRGRPAGRGTKNVKTAANKSQRTQPRTMRKCAKISEYESDENDSGDKELHVQVTDTSDRREEDLDLHKRHSEPQKTKKESNVQVSETVESSERNKALQEDMKDSSEPERMFVPEVEMTDKSRHNEQTSQVTNKLEMWEDPVQAMLFNMIPSLATKKVEETKNHDIAEEKPAEMTNAEAEPSTRKKKKVSYKELANELLKDW* 1175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g1328 1174 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 102 210 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Aev04g1328 1174 Pfam ATP dependent DNA ligase C terminal region 466 585 IPR012309 GO:0003910|GO:0006281|GO:0006310
Aev04g1328 1174 Gene3D BRCT domain 666 778 IPR036420 -
Aev04g1328 1174 SMART BRCT_7 812 898 IPR001357 -
Aev04g1328 1174 SMART BRCT_7 652 728 IPR001357 -
Aev04g1328 1174 Coils Coil 127 147 - -
Aev04g1328 1174 Pfam DNA ligase IV 745 776 IPR021536 GO:0003910
Aev04g1328 1174 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 251 259 IPR016059 GO:0003909
Aev04g1328 1174 Gene3D - 1 219 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Aev04g1328 1174 Pfam ATP dependent DNA ligase domain 227 442 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Aev04g1328 1174 MobiDBLite consensus disorder prediction 1132 1160 - -
Aev04g1328 1174 CDD BRCT_DNA_ligase_IV_rpt1 654 740 - -
Aev04g1328 1174 CDD OBF_DNA_ligase_IV 449 593 - -
Aev04g1328 1174 MobiDBLite consensus disorder prediction 1027 1052 - -
Aev04g1328 1174 ProSiteProfiles BRCT domain profile. 838 908 IPR001357 -
Aev04g1328 1174 PANTHER DNA LIGASE 4 3 908 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Aev04g1328 1174 MobiDBLite consensus disorder prediction 1027 1082 - -
Aev04g1328 1174 MobiDBLite consensus disorder prediction 928 1003 - -
Aev04g1328 1174 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 62 600 IPR000977 GO:0003910|GO:0005524|GO:0071897
Aev04g1328 1174 SUPERFAMILY BRCT domain 654 739 IPR036420 -
Aev04g1328 1174 Pfam BRCT domain, a BRCA1 C-terminus domain 652 735 IPR001357 -
Aev04g1328 1174 MobiDBLite consensus disorder prediction 613 628 - -
Aev04g1328 1174 SUPERFAMILY Nucleic acid-binding proteins 450 601 IPR012340 -
Aev04g1328 1174 Gene3D DNA ligase/mRNA capping enzyme 221 444 - -
Aev04g1328 1174 ProSiteProfiles ATP-dependent DNA ligase family profile. 341 479 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Aev04g1328 1174 CDD Adenylation_DNA_ligase_IV 215 447 IPR044125 GO:0005524
Aev04g1328 1174 ProSiteProfiles BRCT domain profile. 650 738 IPR001357 -
Aev04g1328 1174 MobiDBLite consensus disorder prediction 604 630 - -
Aev04g1328 1174 MobiDBLite consensus disorder prediction 928 955 - -
Aev04g1328 1174 Gene3D BRCT domain 796 908 IPR036420 -
Aev04g1328 1174 MobiDBLite consensus disorder prediction 1065 1082 - -
Aev04g1328 1174 Pfam DNA ligase N terminus 9 187 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Aev04g1328 1174 SUPERFAMILY BRCT domain 795 910 IPR036420 -
Aev04g1328 1174 ProSitePatterns ATP-dependent DNA ligase signature 2. 418 442 IPR016059 GO:0003909
Aev04g1328 1174 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 186 443 - -
Aev04g1328 1174 MobiDBLite consensus disorder prediction 986 1001 - -
Aev04g1328 1174 Gene3D - 445 606 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g1328 Aev-Chr4 8985405 8997045 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g1328 63 602 Core DNA Replication Machinery Family AT1G08130 24.320 7.97e-30 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g1328 K10777 - gmx:100816002 1826.6