Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aev04g1208 | ATGGAAGCTTACGGTGGTGGATTCTTGGTCGATGAGAAGGCCGTTAGGGTCGAGAACGCTTTCCTCGAGTTTCTCAAGAGCTTCAGGTCGGGGAACAGGAACGAGCTTCATTACGAGGGGGAGATAGAAGTGATGAGGGCCAACGAGTCAAATACCATGTACATCGATTTCGACCACATCATCAGATTCAGTGATCTTCTTCAAAAAGCTATCTCCGATGAATATTTGAGATTTGAACCTTATTTGAAGAACGCTTGCAAGAGGTTCGTTATGGACCTGAAGCCAACTTTCATATCCGACGATAACCCTAACAAGGACATAAACGTTGCCTTCTACAACATTCCAATCGTTAAGCGGCTTAGGGAATTGGCCACATCAGAAATCGGAAGACTGGTAGCGGTAACTGGAGTGGTAACAAGGACAAGTGAGGTTCGGCCGGAGCTTCTCCAGGGAACTTTCAAGTGCTTAGACTGTGGTGGGGTTATAAAGAATGTGGAACAGCAATTCAAGTATACTGAGCCAACAATCTGCGTTAATGCAACCTGTAACAATCGGAATAGGTGGGTACTACTGCGCCAAGAGAGCAAATTTGCAGATTGGCAAAAGGTTAGGATGCAGGAGACATCCAAAGAGATACCTGCAGGATCTCTGCCTAGGTCATTGGATGTTATTCTTCGTCACGAGATTGTGGAACATGCCAGGGCTGGTGACACGGTTATTTTCACAGGAACTGTAGTTGTTATACCAGACATTTTGGCATTGGCATCCCCTGGAGAGAGATCAGAATGCCGCCGGGAAGCATCTCAACGTAAGGGTTCTACAGCTGGAAATGAAGGTGTTAGTGGCCTCCGGGCTTTGGGAGTTAGAGACCTCTCTTATCGTCTAGCTTTTATTGCCAATTCTGTTCAGATTTGTGATGGTAGAAGAGATGCTGACATCAGGAATAGAAAGAAGGATTCTGACGAAGATGATCTGCAGTTTACTACAGAGGAACTGGATGAAATTCAGCGAATGAGGAATACTCCAGATTTCTTCAGCAAACTTGTTGACAGCGTTGCCCCAACTGTTTTTGGTCATCAAGATATAAAGAGAGCAATCCTTCTAATGCTTATGGGTGGTGTCCACAAATTAACTCATGAAGGCATCAACCTCAGAGGAGACATAAATGTCTGTGTTGTTGGAGATCCCAGCTGTGCAAAGTCTCAATTCCTCAAGTATACTTCAGGCATAGTTCCAAGATCTGTGTATACTTCTGGGAAATCATCATCAGCTGCTGGTTTGACTGCAACAGTTGCTAAGGAACCAGAAACTGGGGAGTTTTGTATTGAGGCTGGTGCTTTGATGCTTGCGGACAATGGAATTTGCTGCATTGATGAATTTGATAAGATGGACATCAGAGATCAGGTTGCGATTCATGAGGCCATGGAGCAACAGACTATTAGTATCACAAAAGCAGGAATTCAAGCAACACTTAATGCTCGTACTTCCATCCTTGCTGCTGCCAACCCTGCTGGGGGACGCTATGATAAGTCTAAACCACTTAAGTACAATGTGGCTCTTCCACCCGCTATACTTTCAAGGTTTGATCTTGTATATGTTATGATTGATGACCCTGACGATCAGACAGATTACCACATAGCTCATCATATTGTCAGAGTTCATCAAAAGCGTGAAGAGGCCCTTACTCCAGCATTCACTACGGCTGAGCTGAAGCGTTATATAGCTTATGCAAAAACTCTTAAACCAAAGCTCACGTCAGATGCCAGAAAATTACTCGTAGAATCTTATGTTGCTCTCCGTAGAGGTGATACAAACCCTGGGAGTAGGGTTGCATATCGAATGACAGTTAGGCAGCTGGAGGCATTAATCAGGCTGTCTGAGGCCATTGCACGGAGCCATTTGGAAACTCAGATACAACCTCGTCATGTTCGTCTAGCAGTAAGACTGCTGAAAACATCCATAATAAGTGTGGAGTCCAGTGAGATTGATCTATCTGAGTTTCAAGAGGAGAACCGGGGTGATGGCGATGATGGAAATGATGCTAATAGAGATGCTGATGGTCAAGCGGGAGACCCCACAGCTCAGCAAGGCCCTGGGGCTAATGAAAATGCAGCAGATGGATCTAACCCCCAGGCGAAGAAACTCATTATTAGTGATGAATACTTTCAGAGAGTAACCAGGGCCCTTATCATGCATCTCAGACAGCACGAAGAAACTGTCATGCAAGGAGGAGATGGGTTGGCTGGAATGAGGCAACGAGATTTGATTAAATGGTATGTAGACCAACAAAATGAGAAAAACAGCTACAGCTCCATGGAGGAGGCAGCAGCAGAAGTTTCCAAACTTAAAGCTATTATAGAGAGTTTAATTCAAAGAGAGGGGTATTTGATAGTGGTGGATGATGGTAGGAATAGAGAAGGTGCAGCAGAAGCAGCTGATCTCCCTGAGGCTCAGCTCCTTCTGCCACTACCGTGGCTTCCACCGCCGCTGCTGTGCCGCATGATGTTACGTCCACTGCGAAGCCGATCCTTCTGCACACAGTCAACAGTAGTTCGGACATTTATTAACTGA | 2571 | 0.4535 | MEAYGGGFLVDEKAVRVENAFLEFLKSFRSGNRNELHYEGEIEVMRANESNTMYIDFDHIIRFSDLLQKAISDEYLRFEPYLKNACKRFVMDLKPTFISDDNPNKDINVAFYNIPIVKRLRELATSEIGRLVAVTGVVTRTSEVRPELLQGTFKCLDCGGVIKNVEQQFKYTEPTICVNATCNNRNRWVLLRQESKFADWQKVRMQETSKEIPAGSLPRSLDVILRHEIVEHARAGDTVIFTGTVVVIPDILALASPGERSECRREASQRKGSTAGNEGVSGLRALGVRDLSYRLAFIANSVQICDGRRDADIRNRKKDSDEDDLQFTTEELDEIQRMRNTPDFFSKLVDSVAPTVFGHQDIKRAILLMLMGGVHKLTHEGINLRGDINVCVVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKREEALTPAFTTAELKRYIAYAKTLKPKLTSDARKLLVESYVALRRGDTNPGSRVAYRMTVRQLEALIRLSEAIARSHLETQIQPRHVRLAVRLLKTSIISVESSEIDLSEFQEENRGDGDDGNDANRDADGQAGDPTAQQGPGANENAADGSNPQAKKLIISDEYFQRVTRALIMHLRQHEETVMQGGDGLAGMRQRDLIKWYVDQQNEKNSYSSMEEAAAEVSKLKAIIESLIQREGYLIVVDDGRNREGAAEAADLPEAQLLLPLPWLPPPLLCRMMLRPLRSRSFCTQSTVVRTFIN* | 857 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aev04g1208 | 856 | MobiDBLite | consensus disorder prediction | 665 | 709 | - | - | |
| Aev04g1208 | 856 | MobiDBLite | consensus disorder prediction | 665 | 684 | - | - | |
| Aev04g1208 | 856 | Pfam | MCM N-terminal domain | 19 | 113 | IPR027925 | - | |
| Aev04g1208 | 856 | Coils | Coil | 772 | 792 | - | - | |
| Aev04g1208 | 856 | ProSitePatterns | MCM family signature. | 453 | 461 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Aev04g1208 | 856 | MobiDBLite | consensus disorder prediction | 694 | 708 | - | - | |
| Aev04g1208 | 856 | Pfam | MCM AAA-lid domain | 569 | 654 | IPR041562 | - | |
| Aev04g1208 | 856 | CDD | MCM6 | 347 | 653 | - | - | |
| Aev04g1208 | 856 | Gene3D | - | 711 | 821 | - | - | |
| Aev04g1208 | 856 | SUPERFAMILY | Nucleic acid-binding proteins | 21 | 250 | IPR012340 | - | |
| Aev04g1208 | 856 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 445 | 459 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aev04g1208 | 856 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 497 | 509 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aev04g1208 | 856 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 473 | 486 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aev04g1208 | 856 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 524 | 532 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aev04g1208 | 856 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 385 | 400 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aev04g1208 | 856 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM6 | 11 | 783 | - | - | |
| Aev04g1208 | 856 | Gene3D | - | 324 | 672 | IPR027417 | - | |
| Aev04g1208 | 856 | SMART | mcm | 116 | 655 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Aev04g1208 | 856 | Pfam | MCM6 C-terminal winged-helix domain | 713 | 814 | IPR041024 | - | |
| Aev04g1208 | 856 | Gene3D | - | 147 | 198 | - | - | |
| Aev04g1208 | 856 | Coils | Coil | 318 | 338 | - | - | |
| Aev04g1208 | 856 | ProSiteProfiles | MCM family domain profile. | 344 | 550 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aev04g1208 | 856 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 117 | 129 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Aev04g1208 | 856 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 279 | 300 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Aev04g1208 | 856 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 167 | 184 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Aev04g1208 | 856 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 220 | 231 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Aev04g1208 | 856 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 75 | 87 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Aev04g1208 | 856 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 11 | 783 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Aev04g1208 | 856 | Gene3D | - | 120 | 248 | IPR012340 | - | |
| Aev04g1208 | 856 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 354 | 655 | IPR027417 | - | |
| Aev04g1208 | 856 | Pfam | MCM OB domain | 120 | 248 | IPR033762 | - | |
| Aev04g1208 | 856 | Pfam | MCM P-loop domain | 332 | 554 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aev04g1208 | 856 | Gene3D | - | 9 | 116 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aev04g1208 | Aev-Chr4 | 7752923 | 7758381 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aev04g1208 | 1 | 799 | Core DNA Replication Machinery Family | AT5G44635 | 74.728 | 0.0 | 1277 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aev04g1208 | K02542 | - | gmx:100787290 | 1374.38 |