Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g1062 ATGGCTTCAGCAAGCAGAGCAACGAACTCAGTCCCCCAGCAACAGCAACAGCAACAGCAACGAGGAATCATGAGCACAACATCAACATCAAAACGCACTGTTTACACGACCACCAACAACGAGTCAATCAGCAAGGCCATAGCTCAGTACACCGAAGACGCTCGCCTCCACGCCGTATTCGAACAATCCGGCGAGTCCGGCAAGTCCTTCGACTACTCTCACTCCGTACGCCTCACCGCCGATTCTGTCCCGGAGCAGCAGATCACCGCCTACCTCCTCAAGATCCAGCGTGGCGGCCTCATTCAGCCTTTCGGCTGCATGATCACCGTCGACGAGCCCTCCTTCCGCATCCTCGGGTATTCCGAGAACGCCAAGGAGATGCTCGGGATCTCGCCGCAGTCAGTCCCGACACTAGAGCGCCTCCCTGGCGGCGGAAGCTCCCCCGAGGAGGCACTCTGTGTTGGGGCTGACGTGCGAGCCCTTTTTACCCCATCGAGCAGTGTGCTGCTCGAGAGGGCGTTCGGGGCGCGTGAGATCACGCTCCTGAACCCTCTTTGGATTCATTCTAGAAGTTCGGGGAAGCCCTTTTACGGAATTTTGCACCGAATTGATGTTGGAATTGTCATTGATTTGGAGCCTGCTAGGACTGAGGACCCTGCACTTTCAATTGCAGGTGCCGTACAGTCTCAGAAGCTTGCTGTTAGGGCAATTTCTCAGCTTCAGGCTCTTCCTGGTGGTGATGTGAAGCTTCTTTGTGACGCTGTGGTTGAGAGTGTGAGGGAATTGACAGGTTATGATAGGGTTATGGTGTATAAGTTTCATGAGGATGAGCATGGTGAGGTTGTTGCTGAGAGTAAGAGGCCTGATTTGGAACCTTACATTGGTTTGCATTACCCTGCCACTGATATACCTCAGGCTTCTAGGTTTTTGTTTAAGCAGAATAGGGTTAGGATGATTGTTGATTGCCATGCTTCACCTGTGAGGGTGGTGCAGGATGAGGCACTTGTGCAGCCCTTGTGTTTGGTTGGTTCCACACTGCGTGCCCCACACGGCTGCCATGCTCAGTATATGGCCAATATGGGGTCGATCGCTTCGTTGGTTATGGCTGTTATTATCAATGGGAATGATGAGGAGGCTGTTGGCCGCAGCTCGATGAGGCTGTGGGGGTTGGTTGTTTGCCACCATACTTCAGCTAGGTGTATACCTTTTCCGTTGAGGTATGCTTGTGAGTTCTTGATGCAGGCCTTTGGGCTGCAGCTGAACATGGAACTTCAGTTGGCGATGCAGTCGTTGGAGAAGCGAGTTTTGAGGACGCAGACTCTGTTGTGTGACATGCTTCTTAGGGACTCTCCTACTGGCATTGTCACCCAGAGTCCTAGTATTATGGACTTGGTGAAGTGCGATGGAGCTGCTTTGTATTACCAGGGAAACTACTGTCCGTTGGGTGTCACGCCGACTGAATCTCAGATTAGGGATATCATAGAGTGGTTGCTAGCTTATCATGGAGATTCAACTGGTTTGAGTACTGATAGTCTGGGTGATGCAGGGTATCCTGGGGCTGCCTCACTTGGGGATGCAGTTTGTGGTATGGCTGTTGCTTATATCACTGAAAGGGATTTTCTTTTCTGGTTTAGATCCCACACCGCAAAAGAGATCAAATGGGGCGGTGCAAAGCATCACCCAGAGGATAAGGATGATGGACAGAGAATGCACCCTCGCTCTTCGTTCAAGGCATTTTTGGAAGTGGTGAAAAGCCGAAGTTTGCCGTGGGAGAATGCAGAAATGGATGCAATTCACTCTTTGCAGCTTATTTTGCGAGACTCGTTTAGAGATGCTGAGCATAGCAATTCGAAGGCTGTTGTACATTCGCATCTGGCGGAACTAGAGTTGCAAGGGGTAGATGAACTAAGTTCTGTGGCTAGGGAAATGGTCAGATTGATAGAAACTGCCACTGCTCCCATATTTGCTGTTGATGTCGATGGCCGCATAAATGGGTGGAATGCTAAGGTTTCAGAATTGACAGGGCTCCCAGTCGAGGAGGCTATGGGGAAGTCGTTGGTTCATGATCTTGTGTATAAGGAGTCTGAAGAAACTGTAGAAAAGCTTCTTTCACGTGCTTTAAGAGGTGAAGAAGATAAGAATGTTGAGATAAAATTGAAGACTTTTGGCCCAGACCATCAAAATAATGCAGTTTTCGTAGTGGTAAATGCTTGCTCCAGCAAGGATTATACAAATAATATAGTTGGAGTATGCTTTGTTGGTCAGGATGTTACTGGTCAGAAGGTTGTAATGGACAAGTTTATTAACATACAAGGTGACTACAAGGCTATTGTCCATAGTCCAAATCCATTGATCCCTCCTATTTTTGCATCGGATGATAACACTTGTTGCTTAGAGTGGAACACTGCCATGGAAAAGCTTACTGGTTGGGGCCGTGCAGATGTCATTGGAAAAATGTTGGTTGGAGAGGTTTTCGGTAGTTGCTGTCAGTTAAAGGGCTCAGATGCTTTAACGAAGTTCATGATTGTCTTGCACAATGCCCTCGGTGGACAAGATACTGATAAATTCCCCTTTTCATTTCTTGACCGGCATGGAAAATATGTGCAAGCTGTTCTGACTGCAAATAAGAGGATTAACATGAATGGTCAGATTATTGGAGCTTTTTGCTTTTTGCAAATTGTGAGCCCTGAACTTCAACAGGCTCTGAAAGTCCAGAGACAACAGGAGAATAATTGCTACGCCAGGATGAAAGAGTTAGCTTATATTTGTCAAGAAGTAAAGAACCCCTTGAGTGGCATACGCTTTACAAACTCTCTTTTGGAGGCTACTGGTTTGACTGATGAGCAAAAGCAGTTTCTTGAGACTAGTACAGCTTGTGAGAAGCAAATGCTAAAAATAATACGGGACATTGATCTGGAAGGCATCGAAGATGGGTTGTTGGAGCTTGAAAAGGGGGAATTCTTGCTTGGGAACGTCATAAATGCAGTTGTTAGCCAAGTAATGATATTGCTAAGAGAGAGAAATTTACAGTTGATTCGTGATATTCCTGAAGAAATCAAGACATTGGCTGTTTATGGTGATCAGTTGAGGATTCAACAAGTCTTGGCTGATTTCTTATTGAATGTGGTGCGTTATGCACCTTCTCCTGATGGCTGGGTAGAGATTCATGTAGTTCCAAGAATAAAACAAATTTCTGATGGACTTACTCTTCTCCATGTTGAATTTAGGATGGTATGTCCTGGTGAAGGTCTTCCCCCTGAATTGGTTCAAGACATGTTCCACAACAGTCGGTGGGTGACTCAAGAAGGCTTAGGGCTGAGCATGAGCAGGAAGATTCTGAAGTTAATGAACGGTGAAGTCCAATACATCAGGGAGGCAGAACGGTGCTACTTCTTCGTTCTTCTTGAACTACCAGTGACACGAAGAAGCTACCCTACAAGTGTTAATTAG 3450 0.4701 MASASRATNSVPQQQQQQQQRGIMSTTSTSKRTVYTTTNNESISKAIAQYTEDARLHAVFEQSGESGKSFDYSHSVRLTADSVPEQQITAYLLKIQRGGLIQPFGCMITVDEPSFRILGYSENAKEMLGISPQSVPTLERLPGGGSSPEEALCVGADVRALFTPSSSVLLERAFGAREITLLNPLWIHSRSSGKPFYGILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQALPGGDVKLLCDAVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHASPVRVVQDEALVQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIINGNDEEAVGRSSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLAMQSLEKRVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGNYCPLGVTPTESQIRDIIEWLLAYHGDSTGLSTDSLGDAGYPGAASLGDAVCGMAVAYITERDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDAEHSNSKAVVHSHLAELELQGVDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKVSELTGLPVEEAMGKSLVHDLVYKESEETVEKLLSRALRGEEDKNVEIKLKTFGPDHQNNAVFVVVNACSSKDYTNNIVGVCFVGQDVTGQKVVMDKFINIQGDYKAIVHSPNPLIPPIFASDDNTCCLEWNTAMEKLTGWGRADVIGKMLVGEVFGSCCQLKGSDALTKFMIVLHNALGGQDTDKFPFSFLDRHGKYVQAVLTANKRINMNGQIIGAFCFLQIVSPELQQALKVQRQQENNCYARMKELAYICQEVKNPLSGIRFTNSLLEATGLTDEQKQFLETSTACEKQMLKIIRDIDLEGIEDGLLELEKGEFLLGNVINAVVSQVMILLRERNLQLIRDIPEEIKTLAVYGDQLRIQQVLADFLLNVVRYAPSPDGWVEIHVVPRIKQISDGLTLLHVEFRMVCPGEGLPPELVQDMFHNSRWVTQEGLGLSMSRKILKLMNGEVQYIREAERCYFFVLLELPVTRRSYPTSVN* 1150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g1062 1149 SUPERFAMILY PYP-like sensor domain (PAS domain) 644 753 IPR035965 -
Aev04g1062 1149 Pfam Phytochrome region 437 610 IPR013515 GO:0006355|GO:0009584
Aev04g1062 1149 Pfam PAS fold 90 214 IPR013654 GO:0006355
Aev04g1062 1149 SUPERFAMILY GAF domain-like 227 421 - -
Aev04g1062 1149 Gene3D - 228 585 IPR029016 -
Aev04g1062 1149 CDD PAS 784 892 IPR000014 -
Aev04g1062 1149 Gene3D - 429 602 IPR043150 -
Aev04g1062 1149 Pfam PAS fold 642 757 IPR013767 GO:0006355
Aev04g1062 1149 Pfam PAS fold 773 892 IPR013767 GO:0006355
Aev04g1062 1149 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1026 1133 IPR003594 -
Aev04g1062 1149 SUPERFAMILY GAF domain-like 432 609 - -
Aev04g1062 1149 SMART HKATPase_4 1026 1141 IPR003594 -
Aev04g1062 1149 PANTHER PHYTOCHROME 14 1142 - -
Aev04g1062 1149 SMART pas_2 641 708 IPR000014 -
Aev04g1062 1149 SMART pas_2 772 842 IPR000014 -
Aev04g1062 1149 MobiDBLite consensus disorder prediction 1 36 - -
Aev04g1062 1149 ProSiteProfiles PAS repeat profile. 639 710 IPR000014 -
Aev04g1062 1149 Gene3D PAS domain 786 896 - -
Aev04g1062 1149 ProSitePatterns Phytochrome chromophore attachment site signature. 347 356 IPR013516 -
Aev04g1062 1149 TIGRFAM sensory_box: PAS domain S-box protein 646 761 IPR000014 -
Aev04g1062 1149 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 989 1137 IPR036890 -
Aev04g1062 1149 Pfam GAF domain 248 424 IPR003018 GO:0005515
Aev04g1062 1149 Gene3D - 977 1143 IPR036890 -
Aev04g1062 1149 PANTHER TWO-COMPONENT HISTIDINE KINASE 14 1142 - -
Aev04g1062 1149 CDD PAS 650 757 IPR000014 -
Aev04g1062 1149 CDD HisKA 914 970 IPR003661 GO:0000155|GO:0007165
Aev04g1062 1149 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 906 970 IPR036097 GO:0000155|GO:0007165
Aev04g1062 1149 Gene3D PAS domain 94 350 - -
Aev04g1062 1149 ProSiteProfiles Histidine kinase domain profile. 921 1141 IPR005467 -
Aev04g1062 1149 CDD HATPase_Phy-like 1025 1137 IPR044767 -
Aev04g1062 1149 PIRSF Phytochrome_conventional 22 1146 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Aev04g1062 1149 SMART HisKA_10 914 978 IPR003661 GO:0000155|GO:0007165
Aev04g1062 1149 SUPERFAMILY PYP-like sensor domain (PAS domain) 95 217 IPR035965 -
Aev04g1062 1149 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 247 414 IPR016132 -
Aev04g1062 1149 Pfam His Kinase A (phospho-acceptor) domain 918 977 IPR003661 GO:0000155|GO:0007165
Aev04g1062 1149 Gene3D PAS domain 634 767 - -
Aev04g1062 1149 Gene3D - 897 976 - -
Aev04g1062 1149 PRINTS Phytochrome signature 347 368 IPR001294 GO:0006355|GO:0009584
Aev04g1062 1149 PRINTS Phytochrome signature 572 590 IPR001294 GO:0006355|GO:0009584
Aev04g1062 1149 PRINTS Phytochrome signature 642 658 IPR001294 GO:0006355|GO:0009584
Aev04g1062 1149 PRINTS Phytochrome signature 661 676 IPR001294 GO:0006355|GO:0009584
Aev04g1062 1149 PRINTS Phytochrome signature 755 775 IPR001294 GO:0006355|GO:0009584
Aev04g1062 1149 PRINTS Phytochrome signature 262 281 IPR001294 GO:0006355|GO:0009584
Aev04g1062 1149 PRINTS Phytochrome signature 454 474 IPR001294 GO:0006355|GO:0009584
Aev04g1062 1149 PRINTS Phytochrome signature 162 184 IPR001294 GO:0006355|GO:0009584
Aev04g1062 1149 PRINTS Phytochrome signature 735 752 IPR001294 GO:0006355|GO:0009584
Aev04g1062 1149 PRINTS Phytochrome signature 539 558 IPR001294 GO:0006355|GO:0009584
Aev04g1062 1149 SUPERFAMILY PYP-like sensor domain (PAS domain) 787 891 IPR035965 -
Aev04g1062 1149 ProSiteProfiles PAS repeat profile. 773 825 IPR000014 -
Aev04g1062 1149 SMART gaf_1 247 434 IPR003018 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g1062 Aev-Chr4 6655248 6660188 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g1062 5 1139 Histidine Kinase Gene Family AT4G16250 73.473 0.0 1755
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g1062 K12121 - gmx:100799831 1996.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev04g1062 04 6655248 6660188 Aev04g1062 04 6655248 6660188 ECH