Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g1008 ATGGTGAAAAAGTTATCATCATCATCATTTGAAAGGAAAGAGGCCAAAAGCAGCCCAAGCCAGAAGCGGCGAAGGGATAATAGTGCTAGTACTATTGACAACAACAATGCTGGAAGAAGTGAAAAACAAGTTGAACATCAAGAGCCACATGATTCAACCAAATTTGAATGTTTTACGCCTAGATCATCATCATGTGGTAGAAAAGGTCTCGCATCAGAAGATGGGTCTATTACAGTGAGACTTTCAGACCCTGATGTGCTAGATTGTCCCATTTGCTTTGATTCCCTCACTATTCCAGTCTACCAGTGTGATAATGGCCATGTAGTATGTTCTGCCTGCTGCATCAACCTCCGGAAGAAATGCGCCACGTGCTCCAAACCCATTGGTTCGAACCGATGCAGAGCACTTGAGAAAGTTCTGGAATCTGTTAAAATACAATGCCCTAATGCAGAGTATGGTTGCAATGAGGAAGCATTAAGTTACTCAGAGAAGAATAGCCACAAGCTTAACTGCCCCTATGTGCCATGTCATTGCCCACATTCTGATTGTGGCTTTGTTGCCTCATCCAAGGACTTAATCATGCACTTCAGTGCTAAACATGGTGCAGAGCAGAGTTTTATGTATGATTACAAATTCTCTGTCACATTGAATTCTGATGAAAATGATGGGCAGCCCATTATCATCCTTCAAGAAGCTACTGATGGAAACTTGTTTATTCTGCATAATAATGTTGTGGGGCGTGCGGGAAATGCAATTAGTGTTAGTTGCATTGGGCCTAATAGTTCTGATGATCCTGGGTATGAGTATCAGATTTTTGCTGAATCAAAGGGATGCTGTTTAGAGTTGAAATCTGTTACCAAGAACATTCAAGGACCTGGTAATGGTGGTGGCATTCATTCTTCATCTGGGTTCCTCTTGATTCCCTTTGAGTTTTTTGGTACTTCTGAAACTGATGATGAAGCTCGAGAAGTGGAAATCCTCATAAGATTGAACAAAGGCATGAGGTTTACGCGCCTTTCCAGATTAATTTGCCGTCTCCCTCAGCCCGGTACATGTAGGCCTTTGCAATGCCGTGCCTTCCAGCCAGATGTTTCTGTAGATCCTAAGGCCAAGCCAAAAAAGTACAAAATTCCTCAATCTTATGATCCCTATGGCCCCAGACCTCCACCCTCAGAAAAAATCATTCAGCTTGCAGAGCGAATTGGAGAACTACCTGAGGAAGAACGCAGTCAAATTATGCCTACATTGGCCGAAAGATTAAGGCTTCCAAAGTTGCAGTCGATTTCTACTGATGGTTTGGACTTGGGCCAGCAAGGTGATGCTGCTGGACCACAGGTCGAGGAGAAAAAGGCAGAGAAAACAACATTTGATGTGAAATTGGAGAAATTTGATGCTGCCGCAAAGATCAAGGTGATTAAGGAGGTAAGAGCATTCACTAACCTTGGATTGAAAGAAGCCAAAGAACTCGTTGAAAAGGCACCGGTTTTGCTTAAACAAGGGGCCACAAAAGAGGAGGCAAATGAAATTATTGAAAAATTAAAAACTGCTGGAGGAGTTGCAGTTATGGAGTAG 1572 0.4281 MVKKLSSSSFERKEAKSSPSQKRRRDNSASTIDNNNAGRSEKQVEHQEPHDSTKFECFTPRSSSCGRKGLASEDGSITVRLSDPDVLDCPICFDSLTIPVYQCDNGHVVCSACCINLRKKCATCSKPIGSNRCRALEKVLESVKIQCPNAEYGCNEEALSYSEKNSHKLNCPYVPCHCPHSDCGFVASSKDLIMHFSAKHGAEQSFMYDYKFSVTLNSDENDGQPIIILQEATDGNLFILHNNVVGRAGNAISVSCIGPNSSDDPGYEYQIFAESKGCCLELKSVTKNIQGPGNGGGIHSSSGFLLIPFEFFGTSETDDEAREVEILIRLNKGMRFTRLSRLICRLPQPGTCRPLQCRAFQPDVSVDPKAKPKKYKIPQSYDPYGPRPPPSEKIIQLAERIGELPEEERSQIMPTLAERLRLPKLQSISTDGLDLGQQGDAAGPQVEEKKAEKTTFDVKLEKFDAAAKIKVIKEVRAFTNLGLKEAKELVEKAPVLLKQGATKEEANEIIEKLKTAGGVAVME* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g1008 523 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 14 329 IPR044286 -
Aev04g1008 523 SUPERFAMILY ClpS-like 452 522 IPR014719 -
Aev04g1008 523 Gene3D - 450 522 IPR014719 -
Aev04g1008 523 MobiDBLite consensus disorder prediction 433 453 - -
Aev04g1008 523 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 196 IPR013083 -
Aev04g1008 523 MobiDBLite consensus disorder prediction 39 55 - -
Aev04g1008 523 Pfam Ribosomal protein L7/L12 C-terminal domain 456 519 IPR013823 GO:0003735|GO:0006412
Aev04g1008 523 Pfam Seven in absentia protein family 132 290 IPR018121 GO:0005737|GO:0006511|GO:0007275
Aev04g1008 523 MobiDBLite consensus disorder prediction 1 55 - -
Aev04g1008 523 ProSiteProfiles Zinc finger SIAH-type profile. 142 201 IPR013010 GO:0008270
Aev04g1008 523 SUPERFAMILY TRAF domain-like 142 321 - -
Aev04g1008 523 MobiDBLite consensus disorder prediction 368 388 - -
Aev04g1008 523 CDD Ribosomal_L7_L12 392 522 IPR000206 GO:0003735|GO:0005840|GO:0006412
Aev04g1008 523 CDD RING-HC_SIAHs 87 125 - -
Aev04g1008 523 MobiDBLite consensus disorder prediction 1 29 - -
Aev04g1008 523 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 14 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g1008 Aev-Chr4 6210434 6215065 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g1008 85 241 C3H Transcription Factor Family AT2G41980 30.061 1.40e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g1008 K02935 - gmx:100816926 297.36