Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aev04g0900 | ATGTGTTGTTTGATCGATACTCAAATGAGGGAACGTCAAGGCAATGCTGCCGAGGGTGTTAATTGCAATGATAAAATTCCCAAGGTCAATTGGTTGCAGCATGCTAATGCACATCAGAACTTCTCATGCCAGCCCAAGTTCTTGAGCTCCAATTTCCTGTTCTCTTTGCCGGCACACAAGCCTCTTGATGAAGAACCAACTGTTGGGAGGTTTGTAGCTCGTCAAAATCAAAATGCTCAAAGTTCACAAAGAGCACAAGTTGAGAAGGCATGGCTTGGTCTTTCAAGTCTACAGAATTCTAGCCGGAGCTATGCCCAACCTGGAAAAACTGTTAAGATTACTCCTCAGCTTCATGAAGACGGAAAAATAAATTCCTTTCAAGGAACCTATGAGAATGACAAGCTTAGGCGTTCTGATTTCACCACACCTCCAACTGCTGCCAATCATAATTCAAGGTTTTCCCATAGTTTGCTAAACAATCATATTAAAAATGCAGGCCAAAATAATGAGTCTTCCAAACATATGGTCAATGACATTGATGATGACGATGACATACTCCAGAGCATTGATGTTGACCAAATAGTGGAGAACTACCAGTCAAGTTGCACACCCCAACCATCAATATCCAAACTTCCTTCTATTACACCAACTGCTGATAGAAATAATTTTGCTAGACAAGGGGACAATCTTTTGCCACCAGAGCTGTGTATAGATTGCAACCATGGTTACAAGTTAGGGCTTTGCCCTGACAAAGCAAGTCATTTGCAAGAATTGAAGGATAATCTAATTGCTGTCTCTAATGAGCTGCTTGACAATATTGACAACCTCAGTCCGTTGCAGATGGCAAAGCTTCGCCAAGACAGGTCACAGCTGAATATGCAAATTCAGCAGCTTGAAAAATATATTCATTACCGTGATCTTGATGAGGAAAGGCTAAAGTCACATTCTTTGGCATCCACAGCACCTCCTACATCTTTTGGCTATGAAACGCCTCAGCAAACTGTCCACAGTATTGGACCAAACAGATATGAAGCCCAGGATTATATGGGTAATGGAACATGTGGGTCATTGTTCCAGTCTCTTTCATTCTCTTCTGCAGATAAGTATAGCATGTCATCAGGTCCGGTGGAGAGGGAAGCATTCGTCCCAAAGATTATTGACGTAAATTACATTGAAGGTTGCGGCGACAAACGTTGGAGCAGCAAAGATTTTCCTTGGACAAAATCGTTAGAGGTTAACAATAAAAAGGTTTTTGGAAATCACTCATTCCGCCCCAATCAAAGAGAGGTCATTAATGCCACAATGAGTGGATGTGATGTCTTTGTTTTGATGCCCACTGGTGGAGGAAAGAGTCTAACGTATCAGCTACCAGCTCTTATTTGTCCTGGTATAACATTAGTAGTTTCTCCCCTTGTGTCCCTTATTCAAGATCAAATTATGCATCTATTGCAGGCAAATATACCTGCTGCTTACTTAAGTGCTAGCATGGAATGGACTGAACAACAGGACATACTTAGAGAACTTAATTCAGATTATTCTAAATACAAGTTATTATATGTGACACCTGAAAAGGTTGCCAAAAGCGATGTGCTTCTGCGACATTTGGAGAGTTTACATGTTAGAGAGTTGCTTGCAAGGATTGTAATTGATGAGGCTCACTGTGTGAGTCAATGGGGGCATGATTTTAGGCCAGATTATCAGGGGCTTGGTATATTGAAACAGAAATTCCCAAATACCCCTGTTTTAGCCTTAACAGCTACAGCAACCGCAAGTGTAAAAGAGGATGTGGTGCAAGCTCTTGGTCTCGTTAACTGCGTCATTTTTCGGCAGAGTTTTAATCGCCCAAACTTATGGTATTCTGTTGTTCCAAAGACCAAAAAGTGTCTGGAGGATATTGACAAATTCATTAGGGAAAATCATTTTGATGAGTGTGGCATTATCTATTGTCTTTCACGAATGGACTGTGAAAAGGTTGCTGAAAAATTACAGGAATGTGGACATAAAACTGCATTTTATCATGGCAACATGGATCCTGCTCTACGTGCCTTTGTTCAAAAGCAGTGGAGTAAAGATGAGATCAATATTATTTGTGCCACTGTGGCATTTGGAATGGGCATTAATAAACCTGATGTCCGTTTTGTAATCCACCATTCTCTCCCAAAATCTATCGAAGGCTATCATCAGGAATGTGGACGGGCTGGTAGGGATGGTCTCCGTTCCTCCTGTGTATTATATTATAGCTACAGTGACTATATTCGAGTTAAGCATATGTTAAGTCAAGGAGCAGTGGATCCAAGTCCTATGACATCCAGCTACAACCGTTCAAATAATATGACAAATTCAGGAAGGATACTGGAAACACACACTGAAAACCTTTTGCGAATGGTCAGCTATTGTGAAAACGATGTTGATTGTAGACGCCATCTGCAGCTTGCACATTTGGGGGAGAAGTTTGATTCTTCAACGTGTCAGAAAACATGTGATAATTGTTTGAAGATCACAAGTTTCATCGAGAAGGATGTCACAGAGACTGCAAAGCAATTGGTTGAACTGGTTAAGCTAACGGGGCAGAAGGTCTCATCAGCTCATATATTAGAAGTGCATCGCGGTTCCTTAAGCCAGTTGGTCAAGAAGCATCGGCATGAGACTCTGAGACTTCATGGTTCTGGGAAGCACCTAGCTAAGGGTGAGGCTTCCCGAGTATTGCATCATCTTGTTGCAGAGAAATTTCTTGTGGAGGAGGTTAAGAAAAGTGATGTCTATGGATCAGTATCATCCATATTGAAGGTGAATGAAGCCAAGGTCCGTAATCTGATGCATGGTGGGCAGAGAATTACATTGAGGTTCCCATCTTCTGTAAAAGCATCAAAGCAAGGGAAACATGATGCCACTCCAGCAAGAGGTTCTCTGACATCTGCTGGAAAACTAAATCTTCCACAAACTGACACTCCTGCTCAGCCTCAAAATAAAGTTGATTTGGATCTTTCAGCCATGTTATTCCCGGCTCTGCATAAGCTGCGGTCAGCTCTTGTTAAAGAAGCTGGAGAAGGATGCATGGCTTACCACATTTTCAATAACGCTACACTGCAACTGATAAGCAAGAGGCTACCGAGAACAAAGGAAGAACTCCTTGATATAAACGGCATTGGCAAGGCTAAGCTAAGCAAGTATGGAGATCGGTTACTGGAAACCATAGAAAATACCATAAATGAGTATTACAAGTTAGATAAAAGCAGCAGCGGCAGCAAAGGCAGCGGCGATTCTGCGAAAAGAAGGCGAGATGCAAATGGAGATGCAGATGGTAATGACAATGCTGAGGATGATGAGTTCGTCTTCAAAAGCACTGGCCGATCCAAGAAAAGGACAGTAAAGAGAAAGAACAAAAAAGCAGAGATATATGATTCTGGAGAGGAAGAAGATAATTGCAATTATGCATGCTTTGATGAGGACCTAGATTATGACAATATAGAAAATGAAGCACTAAGCAAAATAAATAGTAGGAATGCTGAAGGAAGAGTACTGCCTACCTCAATGGACAAGTTGAAATAG | 3549 | 0.4153 | MCCLIDTQMRERQGNAAEGVNCNDKIPKVNWLQHANAHQNFSCQPKFLSSNFLFSLPAHKPLDEEPTVGRFVARQNQNAQSSQRAQVEKAWLGLSSLQNSSRSYAQPGKTVKITPQLHEDGKINSFQGTYENDKLRRSDFTTPPTAANHNSRFSHSLLNNHIKNAGQNNESSKHMVNDIDDDDDILQSIDVDQIVENYQSSCTPQPSISKLPSITPTADRNNFARQGDNLLPPELCIDCNHGYKLGLCPDKASHLQELKDNLIAVSNELLDNIDNLSPLQMAKLRQDRSQLNMQIQQLEKYIHYRDLDEERLKSHSLASTAPPTSFGYETPQQTVHSIGPNRYEAQDYMGNGTCGSLFQSLSFSSADKYSMSSGPVEREAFVPKIIDVNYIEGCGDKRWSSKDFPWTKSLEVNNKKVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALICPGITLVVSPLVSLIQDQIMHLLQANIPAAYLSASMEWTEQQDILRELNSDYSKYKLLYVTPEKVAKSDVLLRHLESLHVRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCVIFRQSFNRPNLWYSVVPKTKKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKLQECGHKTAFYHGNMDPALRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGLRSSCVLYYSYSDYIRVKHMLSQGAVDPSPMTSSYNRSNNMTNSGRILETHTENLLRMVSYCENDVDCRRHLQLAHLGEKFDSSTCQKTCDNCLKITSFIEKDVTETAKQLVELVKLTGQKVSSAHILEVHRGSLSQLVKKHRHETLRLHGSGKHLAKGEASRVLHHLVAEKFLVEEVKKSDVYGSVSSILKVNEAKVRNLMHGGQRITLRFPSSVKASKQGKHDATPARGSLTSAGKLNLPQTDTPAQPQNKVDLDLSAMLFPALHKLRSALVKEAGEGCMAYHIFNNATLQLISKRLPRTKEELLDINGIGKAKLSKYGDRLLETIENTINEYYKLDKSSSGSKGSGDSAKRRRDANGDADGNDNAEDDEFVFKSTGRSKKRTVKRKNKKAEIYDSGEEEDNCNYACFDEDLDYDNIENEALSKINSRNAEGRVLPTSMDKLK* | 1183 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aev04g0900 | 1182 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 631 | 793 | IPR001650 | - | |
Aev04g0900 | 1182 | Pfam | HRDC domain | 997 | 1065 | IPR002121 | GO:0003676 | |
Aev04g0900 | 1182 | Gene3D | HRDC domain | 992 | 1081 | IPR044876 | - | |
Aev04g0900 | 1182 | Gene3D | - | 838 | 948 | IPR036388 | - | |
Aev04g0900 | 1182 | Pfam | Helicase conserved C-terminal domain | 630 | 736 | IPR001650 | - | |
Aev04g0900 | 1182 | MobiDBLite | consensus disorder prediction | 1086 | 1111 | - | - | |
Aev04g0900 | 1182 | SMART | hrdc7 | 993 | 1075 | IPR002121 | GO:0003676 | |
Aev04g0900 | 1182 | CDD | SF2_C_RecQ | 614 | 746 | - | - | |
Aev04g0900 | 1182 | Gene3D | - | 614 | 834 | IPR027417 | - | |
Aev04g0900 | 1182 | SMART | RQC_2 | 840 | 951 | IPR018982 | GO:0006260|GO:0006281|GO:0043138 | |
Aev04g0900 | 1182 | Coils | Coil | 281 | 301 | - | - | |
Aev04g0900 | 1182 | MobiDBLite | consensus disorder prediction | 951 | 984 | - | - | |
Aev04g0900 | 1182 | ProSitePatterns | DEAH-box subfamily ATP-dependent helicases signature. | 545 | 554 | IPR002464 | - | |
Aev04g0900 | 1182 | Gene3D | - | 389 | 613 | IPR027417 | - | |
Aev04g0900 | 1182 | Pfam | RQC domain | 837 | 953 | IPR018982 | GO:0006260|GO:0006281|GO:0043138 | |
Aev04g0900 | 1182 | MobiDBLite | consensus disorder prediction | 1076 | 1111 | - | - | |
Aev04g0900 | 1182 | PANTHER | DNA HELICASE RECQ FAMILY MEMBER | 121 | 1151 | - | - | |
Aev04g0900 | 1182 | SUPERFAMILY | HRDC-like | 996 | 1069 | IPR010997 | GO:0000166|GO:0044237 | |
Aev04g0900 | 1182 | ProSiteProfiles | HRDC domain profile. | 993 | 1075 | IPR002121 | GO:0003676 | |
Aev04g0900 | 1182 | MobiDBLite | consensus disorder prediction | 970 | 984 | - | - | |
Aev04g0900 | 1182 | CDD | DEXHc_RecQ | 414 | 613 | - | - | |
Aev04g0900 | 1182 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 612 | 881 | IPR027417 | - | |
Aev04g0900 | 1182 | PANTHER | ATP-DEPENDENT DNA HELICASE Q-LIKE 4A | 121 | 1151 | - | - | |
Aev04g0900 | 1182 | SMART | ultradead3 | 419 | 622 | IPR014001 | - | |
Aev04g0900 | 1182 | TIGRFAM | recQ_fam: ATP-dependent DNA helicase, RecQ family | 415 | 891 | IPR004589 | GO:0004386|GO:0006310 | |
Aev04g0900 | 1182 | Pfam | RecQ zinc-binding | 748 | 831 | IPR032284 | - | |
Aev04g0900 | 1182 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 398 | 755 | IPR027417 | - | |
Aev04g0900 | 1182 | Pfam | DEAD/DEAH box helicase | 425 | 593 | IPR011545 | GO:0003676|GO:0005524 | |
Aev04g0900 | 1182 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 431 | 606 | IPR014001 | - | |
Aev04g0900 | 1182 | SMART | helicmild6 | 656 | 737 | IPR001650 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aev04g0900 | Aev-Chr4 | 5478262 | 5486206 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aev04g0900 | 645 | 768 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 24.409 | 6.33e-07 | 51.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aev04g0900 | K10901 | - | gmx:100800006 | 1668.67 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Aev04g0900 | 04 | 5478262 | 5486206 | Aev04g0900 | 04 | 5478262 | 5486206 | ECH |