Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g0900 ATGTGTTGTTTGATCGATACTCAAATGAGGGAACGTCAAGGCAATGCTGCCGAGGGTGTTAATTGCAATGATAAAATTCCCAAGGTCAATTGGTTGCAGCATGCTAATGCACATCAGAACTTCTCATGCCAGCCCAAGTTCTTGAGCTCCAATTTCCTGTTCTCTTTGCCGGCACACAAGCCTCTTGATGAAGAACCAACTGTTGGGAGGTTTGTAGCTCGTCAAAATCAAAATGCTCAAAGTTCACAAAGAGCACAAGTTGAGAAGGCATGGCTTGGTCTTTCAAGTCTACAGAATTCTAGCCGGAGCTATGCCCAACCTGGAAAAACTGTTAAGATTACTCCTCAGCTTCATGAAGACGGAAAAATAAATTCCTTTCAAGGAACCTATGAGAATGACAAGCTTAGGCGTTCTGATTTCACCACACCTCCAACTGCTGCCAATCATAATTCAAGGTTTTCCCATAGTTTGCTAAACAATCATATTAAAAATGCAGGCCAAAATAATGAGTCTTCCAAACATATGGTCAATGACATTGATGATGACGATGACATACTCCAGAGCATTGATGTTGACCAAATAGTGGAGAACTACCAGTCAAGTTGCACACCCCAACCATCAATATCCAAACTTCCTTCTATTACACCAACTGCTGATAGAAATAATTTTGCTAGACAAGGGGACAATCTTTTGCCACCAGAGCTGTGTATAGATTGCAACCATGGTTACAAGTTAGGGCTTTGCCCTGACAAAGCAAGTCATTTGCAAGAATTGAAGGATAATCTAATTGCTGTCTCTAATGAGCTGCTTGACAATATTGACAACCTCAGTCCGTTGCAGATGGCAAAGCTTCGCCAAGACAGGTCACAGCTGAATATGCAAATTCAGCAGCTTGAAAAATATATTCATTACCGTGATCTTGATGAGGAAAGGCTAAAGTCACATTCTTTGGCATCCACAGCACCTCCTACATCTTTTGGCTATGAAACGCCTCAGCAAACTGTCCACAGTATTGGACCAAACAGATATGAAGCCCAGGATTATATGGGTAATGGAACATGTGGGTCATTGTTCCAGTCTCTTTCATTCTCTTCTGCAGATAAGTATAGCATGTCATCAGGTCCGGTGGAGAGGGAAGCATTCGTCCCAAAGATTATTGACGTAAATTACATTGAAGGTTGCGGCGACAAACGTTGGAGCAGCAAAGATTTTCCTTGGACAAAATCGTTAGAGGTTAACAATAAAAAGGTTTTTGGAAATCACTCATTCCGCCCCAATCAAAGAGAGGTCATTAATGCCACAATGAGTGGATGTGATGTCTTTGTTTTGATGCCCACTGGTGGAGGAAAGAGTCTAACGTATCAGCTACCAGCTCTTATTTGTCCTGGTATAACATTAGTAGTTTCTCCCCTTGTGTCCCTTATTCAAGATCAAATTATGCATCTATTGCAGGCAAATATACCTGCTGCTTACTTAAGTGCTAGCATGGAATGGACTGAACAACAGGACATACTTAGAGAACTTAATTCAGATTATTCTAAATACAAGTTATTATATGTGACACCTGAAAAGGTTGCCAAAAGCGATGTGCTTCTGCGACATTTGGAGAGTTTACATGTTAGAGAGTTGCTTGCAAGGATTGTAATTGATGAGGCTCACTGTGTGAGTCAATGGGGGCATGATTTTAGGCCAGATTATCAGGGGCTTGGTATATTGAAACAGAAATTCCCAAATACCCCTGTTTTAGCCTTAACAGCTACAGCAACCGCAAGTGTAAAAGAGGATGTGGTGCAAGCTCTTGGTCTCGTTAACTGCGTCATTTTTCGGCAGAGTTTTAATCGCCCAAACTTATGGTATTCTGTTGTTCCAAAGACCAAAAAGTGTCTGGAGGATATTGACAAATTCATTAGGGAAAATCATTTTGATGAGTGTGGCATTATCTATTGTCTTTCACGAATGGACTGTGAAAAGGTTGCTGAAAAATTACAGGAATGTGGACATAAAACTGCATTTTATCATGGCAACATGGATCCTGCTCTACGTGCCTTTGTTCAAAAGCAGTGGAGTAAAGATGAGATCAATATTATTTGTGCCACTGTGGCATTTGGAATGGGCATTAATAAACCTGATGTCCGTTTTGTAATCCACCATTCTCTCCCAAAATCTATCGAAGGCTATCATCAGGAATGTGGACGGGCTGGTAGGGATGGTCTCCGTTCCTCCTGTGTATTATATTATAGCTACAGTGACTATATTCGAGTTAAGCATATGTTAAGTCAAGGAGCAGTGGATCCAAGTCCTATGACATCCAGCTACAACCGTTCAAATAATATGACAAATTCAGGAAGGATACTGGAAACACACACTGAAAACCTTTTGCGAATGGTCAGCTATTGTGAAAACGATGTTGATTGTAGACGCCATCTGCAGCTTGCACATTTGGGGGAGAAGTTTGATTCTTCAACGTGTCAGAAAACATGTGATAATTGTTTGAAGATCACAAGTTTCATCGAGAAGGATGTCACAGAGACTGCAAAGCAATTGGTTGAACTGGTTAAGCTAACGGGGCAGAAGGTCTCATCAGCTCATATATTAGAAGTGCATCGCGGTTCCTTAAGCCAGTTGGTCAAGAAGCATCGGCATGAGACTCTGAGACTTCATGGTTCTGGGAAGCACCTAGCTAAGGGTGAGGCTTCCCGAGTATTGCATCATCTTGTTGCAGAGAAATTTCTTGTGGAGGAGGTTAAGAAAAGTGATGTCTATGGATCAGTATCATCCATATTGAAGGTGAATGAAGCCAAGGTCCGTAATCTGATGCATGGTGGGCAGAGAATTACATTGAGGTTCCCATCTTCTGTAAAAGCATCAAAGCAAGGGAAACATGATGCCACTCCAGCAAGAGGTTCTCTGACATCTGCTGGAAAACTAAATCTTCCACAAACTGACACTCCTGCTCAGCCTCAAAATAAAGTTGATTTGGATCTTTCAGCCATGTTATTCCCGGCTCTGCATAAGCTGCGGTCAGCTCTTGTTAAAGAAGCTGGAGAAGGATGCATGGCTTACCACATTTTCAATAACGCTACACTGCAACTGATAAGCAAGAGGCTACCGAGAACAAAGGAAGAACTCCTTGATATAAACGGCATTGGCAAGGCTAAGCTAAGCAAGTATGGAGATCGGTTACTGGAAACCATAGAAAATACCATAAATGAGTATTACAAGTTAGATAAAAGCAGCAGCGGCAGCAAAGGCAGCGGCGATTCTGCGAAAAGAAGGCGAGATGCAAATGGAGATGCAGATGGTAATGACAATGCTGAGGATGATGAGTTCGTCTTCAAAAGCACTGGCCGATCCAAGAAAAGGACAGTAAAGAGAAAGAACAAAAAAGCAGAGATATATGATTCTGGAGAGGAAGAAGATAATTGCAATTATGCATGCTTTGATGAGGACCTAGATTATGACAATATAGAAAATGAAGCACTAAGCAAAATAAATAGTAGGAATGCTGAAGGAAGAGTACTGCCTACCTCAATGGACAAGTTGAAATAG 3549 0.4153 MCCLIDTQMRERQGNAAEGVNCNDKIPKVNWLQHANAHQNFSCQPKFLSSNFLFSLPAHKPLDEEPTVGRFVARQNQNAQSSQRAQVEKAWLGLSSLQNSSRSYAQPGKTVKITPQLHEDGKINSFQGTYENDKLRRSDFTTPPTAANHNSRFSHSLLNNHIKNAGQNNESSKHMVNDIDDDDDILQSIDVDQIVENYQSSCTPQPSISKLPSITPTADRNNFARQGDNLLPPELCIDCNHGYKLGLCPDKASHLQELKDNLIAVSNELLDNIDNLSPLQMAKLRQDRSQLNMQIQQLEKYIHYRDLDEERLKSHSLASTAPPTSFGYETPQQTVHSIGPNRYEAQDYMGNGTCGSLFQSLSFSSADKYSMSSGPVEREAFVPKIIDVNYIEGCGDKRWSSKDFPWTKSLEVNNKKVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALICPGITLVVSPLVSLIQDQIMHLLQANIPAAYLSASMEWTEQQDILRELNSDYSKYKLLYVTPEKVAKSDVLLRHLESLHVRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCVIFRQSFNRPNLWYSVVPKTKKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKLQECGHKTAFYHGNMDPALRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGLRSSCVLYYSYSDYIRVKHMLSQGAVDPSPMTSSYNRSNNMTNSGRILETHTENLLRMVSYCENDVDCRRHLQLAHLGEKFDSSTCQKTCDNCLKITSFIEKDVTETAKQLVELVKLTGQKVSSAHILEVHRGSLSQLVKKHRHETLRLHGSGKHLAKGEASRVLHHLVAEKFLVEEVKKSDVYGSVSSILKVNEAKVRNLMHGGQRITLRFPSSVKASKQGKHDATPARGSLTSAGKLNLPQTDTPAQPQNKVDLDLSAMLFPALHKLRSALVKEAGEGCMAYHIFNNATLQLISKRLPRTKEELLDINGIGKAKLSKYGDRLLETIENTINEYYKLDKSSSGSKGSGDSAKRRRDANGDADGNDNAEDDEFVFKSTGRSKKRTVKRKNKKAEIYDSGEEEDNCNYACFDEDLDYDNIENEALSKINSRNAEGRVLPTSMDKLK* 1183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g0900 1182 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 631 793 IPR001650 -
Aev04g0900 1182 Pfam HRDC domain 997 1065 IPR002121 GO:0003676
Aev04g0900 1182 Gene3D HRDC domain 992 1081 IPR044876 -
Aev04g0900 1182 Gene3D - 838 948 IPR036388 -
Aev04g0900 1182 Pfam Helicase conserved C-terminal domain 630 736 IPR001650 -
Aev04g0900 1182 MobiDBLite consensus disorder prediction 1086 1111 - -
Aev04g0900 1182 SMART hrdc7 993 1075 IPR002121 GO:0003676
Aev04g0900 1182 CDD SF2_C_RecQ 614 746 - -
Aev04g0900 1182 Gene3D - 614 834 IPR027417 -
Aev04g0900 1182 SMART RQC_2 840 951 IPR018982 GO:0006260|GO:0006281|GO:0043138
Aev04g0900 1182 Coils Coil 281 301 - -
Aev04g0900 1182 MobiDBLite consensus disorder prediction 951 984 - -
Aev04g0900 1182 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 545 554 IPR002464 -
Aev04g0900 1182 Gene3D - 389 613 IPR027417 -
Aev04g0900 1182 Pfam RQC domain 837 953 IPR018982 GO:0006260|GO:0006281|GO:0043138
Aev04g0900 1182 MobiDBLite consensus disorder prediction 1076 1111 - -
Aev04g0900 1182 PANTHER DNA HELICASE RECQ FAMILY MEMBER 121 1151 - -
Aev04g0900 1182 SUPERFAMILY HRDC-like 996 1069 IPR010997 GO:0000166|GO:0044237
Aev04g0900 1182 ProSiteProfiles HRDC domain profile. 993 1075 IPR002121 GO:0003676
Aev04g0900 1182 MobiDBLite consensus disorder prediction 970 984 - -
Aev04g0900 1182 CDD DEXHc_RecQ 414 613 - -
Aev04g0900 1182 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 612 881 IPR027417 -
Aev04g0900 1182 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 4A 121 1151 - -
Aev04g0900 1182 SMART ultradead3 419 622 IPR014001 -
Aev04g0900 1182 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 415 891 IPR004589 GO:0004386|GO:0006310
Aev04g0900 1182 Pfam RecQ zinc-binding 748 831 IPR032284 -
Aev04g0900 1182 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 398 755 IPR027417 -
Aev04g0900 1182 Pfam DEAD/DEAH box helicase 425 593 IPR011545 GO:0003676|GO:0005524
Aev04g0900 1182 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 431 606 IPR014001 -
Aev04g0900 1182 SMART helicmild6 656 737 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g0900 Aev-Chr4 5478262 5486206 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g0900 645 768 Eukaryotic Initiation Factors Gene Family AT3G19760 24.409 6.33e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g0900 K10901 - gmx:100800006 1668.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev04g0900 04 5478262 5486206 Aev04g0900 04 5478262 5486206 ECH