Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g0849 ATGGCAGCCATATGCTTGCAGTGGTTGGATACAGTTCTTTCCAAGTCCACAGAAGATAGATATATCCCTAGTTTTTTCTTGGGATCGGCTTTCAGAATGTCATTTCGTAGTATAGTTCGTGATGTGAGGGATAGTATTGGGAGCTTGTCTAGGCGAAGTTTTGATGTCAGGCTAACTGGCCACAATAGAGGAAAATCTCATGGTTCAGTACAGGATTTACATGACCAGCCTCTAGTAGTTCAAAACAGTCGCTGGGCAAGCTTACCCCCGGAATTACTGTATGATGTCATTAGACGGTTAGAGGAGAGTGAGAATACATGGCCTGCTCGAAAGCATGTTGTTGCATGTGCTGCTGTTTGCCAGTCTTGGAGGAGTATGTGCAAGGAAATTGTCAAGAGCCCAGAGTTATGTGGAAAACTCACATTCCCTGTGTCCCTGAAGCAGCCTGGCCCACGAGATGGAATCATTCAATGTTTCATCAAAAGAGATAAATCTAATTTAACATATCACCTGTTCCTTTGTCTCAGCCCTGCTTTGTTAGTTGAAAATGGTAAATTCCTTCTTTCTGCCAAGAGGACCCGGAGAACAACTTACACAGAGTATGTTATTTCTATGGATGCTGACAACATCTCTCGATCAAGCAATACATACATCGGAAAGCTGCGATCTAACTTCCTTGGTACAAAATTCATCATATACGATACTCAACCTCCATACTCTTCTGCCCATATTTGCCCTCCTGGAACTGGGAAGACGAGCCGCAGATTTTATTCCAAAAAGGTCTCGCCAAAGGTCCCATCTGGGAGTTTCAACATAGCTCAGGTAACATATGAATTAAATGTGCTTGGAACACGAGGCCCAAGGAAGATGCACTGCATCATGCATTCAATACCAGCCTCAGCGCTTGATGCTGGTGGCACTGTTCCTGGTCAGCCAGAGCTTCTTCCCCGTTCCCTGGAGGACTCTTTCAGAAGCATCTCATTTTCTAAGTCTCTTGACCACTCTATCGAGTTCAGCAGCGCACGGTTTTCTGAGATTGGAGTATCTGGTAACGAGGATGACGATAACAAGATGAGGCCCTTGGTACTTAAAAACAAGCCTCCGAGATGGCACGAGCAATTACAATGTTGGTGCCTGAATTTCCGTGGAAGGGTAACAGTTGCATCTGTTAAAAACTTTCAGTTGATCGCTGCCACCCAGCCGGCTGCCGGTGCACCCACACCATCTCAACCAGCTCCACCAGAGCATGATAAGATTATTCTGCAGTTTGGCAAAGTTGGGAAAGACATGTTCACCATGGATTATCGGTATCCACTATCTGCATTCCAAGCTTTTGCAATATGCTTGAGCAGCTTTGACACCAAATTGGCTTGTGAATAG 1380 0.4514 MAAICLQWLDTVLSKSTEDRYIPSFFLGSAFRMSFRSIVRDVRDSIGSLSRRSFDVRLTGHNRGKSHGSVQDLHDQPLVVQNSRWASLPPELLYDVIRRLEESENTWPARKHVVACAAVCQSWRSMCKEIVKSPELCGKLTFPVSLKQPGPRDGIIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTYTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYSSAHICPPGTGKTSRRFYSKKVSPKVPSGSFNIAQVTYELNVLGTRGPRKMHCIMHSIPASALDAGGTVPGQPELLPRSLEDSFRSISFSKSLDHSIEFSSARFSEIGVSGNEDDDNKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g0849 459 PANTHER TUBBY-RELATED 33 459 - -
Aev04g0849 459 Gene3D Tubby Protein; Chain A 142 459 IPR025659 -
Aev04g0849 459 SUPERFAMILY Tubby C-terminal domain-like 134 459 IPR025659 -
Aev04g0849 459 Gene3D - 80 136 - -
Aev04g0849 459 Pfam F-box domain 85 132 IPR001810 GO:0005515
Aev04g0849 459 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 33 459 - -
Aev04g0849 459 ProSitePatterns Tub family signature 2. 444 459 IPR018066 -
Aev04g0849 459 SUPERFAMILY F-box domain 81 129 IPR036047 GO:0005515
Aev04g0849 459 Pfam Tub family 146 454 IPR000007 -
Aev04g0849 459 ProSitePatterns Tub family signature 1. 381 394 IPR018066 -
Aev04g0849 459 PRINTS Tubby superfamily signature 381 397 IPR000007 -
Aev04g0849 459 PRINTS Tubby superfamily signature 437 459 IPR000007 -
Aev04g0849 459 PRINTS Tubby superfamily signature 201 217 IPR000007 -
Aev04g0849 459 PRINTS Tubby superfamily signature 416 435 IPR000007 -
Aev04g0849 459 PRINTS Tubby superfamily signature 269 296 IPR000007 -
Aev04g0849 459 PRINTS Tubby superfamily signature 363 380 IPR000007 -
Aev04g0849 459 PRINTS Tubby superfamily signature 217 241 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g0849 Aev-Chr4 5191406 5194315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g0849 33 459 TUB Transcription Factor Family AT1G76900 71.121 0.0 622
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Aev04g0849 Tub 5.4e-117 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g0849 K19600 - gmx:100814578 816.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev04g0849 04 5191406 5194315 Aev04g0849 04 5191406 5194315 ECH