Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g0794 ATGGAAAACGACGACGTCGATATGCACGCAGCTGACAACAACGATGCAGAACTGGATGACATGAAGAAGCGGTTGAAGGAGATGGAAGATGAAGCTGCTGCTTTGCGAGAGATGCAGGCCAAGGTCGAGAAGGAGATGGGATCTGTCCAAGATCCTGCAACTGCTTCTGGGAGTCAGGCAAATAGAGAAGAAGTAGATTCTCGTTCAGTCTTTGTTGGCAACGTGGACTATTCTTGCACTCCTGAGGAAGTGCAGCAACATTTTCAATCATGTGGAACAGTAAACAGAGTCACCATTCGGACAGATAAGTTTGGCCAACCAAAGGGTTATGCTTATGTAGAGTTCCTTGAAACAGAGGCTGTTCAAGAGGCCCTTTTGCTAAATGAATCTGAACTACACGGGCGTCAATTGAAGGTAACGGCTAAGAGGACCAACATACCAGGAATGAAGCAGTACCGACCCCGCCGAGCCAATCCATACATGGGATTCCGAGGAAGAACTCCATATGCTCCTCCCCCTTTTGCCTTTCCTCCATATGGGTATGGAAAGGTTCCAAGGTTCAGAATGGCAATGCGCTATAGCCCCTACTATTAG 594 0.4781 MENDDVDMHAADNNDAELDDMKKRLKEMEDEAAALREMQAKVEKEMGSVQDPATASGSQANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLETEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRANPYMGFRGRTPYAPPPFAFPPYGYGKVPRFRMAMRYSPYY* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g0794 197 MobiDBLite consensus disorder prediction 40 66 - -
Aev04g0794 197 MobiDBLite consensus disorder prediction 1 24 - -
Aev04g0794 197 CDD RRM_II_PABPs 69 140 - -
Aev04g0794 197 Gene3D - 4 141 IPR012677 -
Aev04g0794 197 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 138 IPR000504 GO:0003723
Aev04g0794 197 Coils Coil 11 45 - -
Aev04g0794 197 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 144 IPR000504 GO:0003723
Aev04g0794 197 MobiDBLite consensus disorder prediction 51 65 - -
Aev04g0794 197 SMART rrm1_1 69 140 IPR000504 GO:0003723
Aev04g0794 197 PANTHER POLYADENYLATE-BINDING PROTEIN 1-LIKE 9 194 - -
Aev04g0794 197 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 9 194 - -
Aev04g0794 197 SUPERFAMILY RNA-binding domain, RBD 58 166 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g0794 Aev-Chr4 4866793 4869430 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g0794 69 139 Eukaryotic Initiation Factors Gene Family AT2G36660 31.944 5.93e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g0794 K14396 - mnt:21400190 350.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev04g0794 04 4866793 4869430 Aev04g0794 04 4866793 4869430 ECH
Aev03g2172 03 23951252 23955211 Aev04g0794 04 4866793 4869430 PCT