Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g0785 ATGGGGCTGCATCGCCGGAAATTGGTGCCTGAAATCTGTGAATTGATCTGTCATGTGGAGCAGAATTGTTCATCAGATTGTAAAGTTTGCCTCAAATTATGCCTCACCAATCCCCAATATTACTACTACTCTCAACCACCACCACCGCCGCCACCAACACCACAGGTTCCTCCTTGGTACTTGGATGAAAATGGGCAACAAGGAAAAGGACACACAATCTCAACTGTTTTACTTATTGCTCTTTCTGTTCTTGCTGCTGCTTTCTTTGTTGTTTGTTGCTGTGCCATCTGCACTAGGTTTTTCTCGAGGAGGAGGGTTCCATCAAATCAGCAGACAGAGGAGACCCATGATGATTTTCTCGATGAAGAACATGGACCTGTGGTGGATCACCCCATTTGGTATATCCGAACCCCTGGTCTCCAACAATCCATCATCGATGCCATCACAATTTGTAAGTATAAGAAAGGTGAGGGCTTGATTGAAGGAACAGAGTGCTCTGTTTGCTTGAGTGAGTTCATAGAGGATGAGAGCCTTAGGCTATTGCCAAAGTGTAACCATGCTTTTCATTTACCTTGCATTGATACTTGGCTTACATCGCATACCAATTGCCCTAATTGCCGGGCTCCAATTGTTACCAACTCTGCTAGGATTCCATCTATGGAGCATAATCTTCTTGATTCAAGTTCGAGTTCTGGTTTAAGTTCCTTGGGAAGTACCCAGATGGAAATTTTGGAAAATAGCAGTGAAAACATTGGAGTAATGGAAAATAGTGCTTCTGAATTGAGGAGTAGAGCAGAGGAACAAGGCCAATTGGGGGTTGAAGATGGGACAAGTGTGTCTCAAACTGAAAGCCTTGTAGCTGATGAGGTAGTAAGCATGAGACCAAGGAGATCTGTTTCTTTGGATTCTTCTTCTGTTGCGAAATTCAGTCTTGCTCTTGCATCTGTTCTGTCAATGGAATCTGGTTCTGAATCAAATAGAATTGTGGGGGATATCAGTGAACATATTGTTTCAAAGAGGTTTAGAGGAAATGAGAATTTGCCATCAACTTCCAAAGGAAGAAGCTCTTCTTTCAGGATTAGGTATCTGCATAGTGTTCCAAGTTCAATGAAGAGGTCGCGTTCCTACAATGGTAAACACCTTCTATCATGGTACAGTGGCCGCAGCCAGACTCAGAAGAAGCCAAATGCTCCTATGAGAAGCTTCTAG 1209 0.4334 MGLHRRKLVPEICELICHVEQNCSSDCKVCLKLCLTNPQYYYYSQPPPPPPPTPQVPPWYLDENGQQGKGHTISTVLLIALSVLAAAFFVVCCCAICTRFFSRRRVPSNQQTEETHDDFLDEEHGPVVDHPIWYIRTPGLQQSIIDAITICKYKKGEGLIEGTECSVCLSEFIEDESLRLLPKCNHAFHLPCIDTWLTSHTNCPNCRAPIVTNSARIPSMEHNLLDSSSSSGLSSLGSTQMEILENSSENIGVMENSASELRSRAEEQGQLGVEDGTSVSQTESLVADEVVSMRPRRSVSLDSSSVAKFSLALASVLSMESGSESNRIVGDISEHIVSKRFRGNENLPSTSKGRSSSFRIRYLHSVPSSMKRSRSYNGKHLLSWYSGRSQTQKKPNAPMRSF* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g0785 402 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 9 390 - -
Aev04g0785 402 Pfam Ring finger domain 164 207 IPR001841 -
Aev04g0785 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 215 IPR013083 -
Aev04g0785 402 ProSiteProfiles Zinc finger RING-type profile. 165 207 IPR001841 -
Aev04g0785 402 CDD RING-H2_EL5_like 164 207 - -
Aev04g0785 402 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 9 390 IPR044675 -
Aev04g0785 402 SUPERFAMILY RING/U-box 159 213 - -
Aev04g0785 402 SMART FANCL_C_2 161 215 - -
Aev04g0785 402 SMART ring_2 165 206 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g0785 Aev-Chr4 4824546 4825754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g0785 72 218 C3H Transcription Factor Family AT1G72220 55.556 1.88e-47 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g0785 - - lja:Lj6g3v2193690.1 407.142