Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g0781 ATGTCGCAATCGGAGAGCAAGAAGAAGAAGCACCACAAGCACAAGCAAGATGATGATGAACAACAACATGGAGGAGCAGCTGAAGGAGGCAACGGTGTCGACTTCCTGATAAAGCCGCAGAGCTTCACGCCCTCAATCGACACTTCCCAGTGGCCAATCCTCCTCAAAAACTACGACCGCCTCAACGTCCGTACCGGCCACTATACCCCTCTCCCCTCCGGCTACTCTCCTCTCAAGCGTCCCCTTCAGGAGTACCTCAAATATGGCGTCCTCAACCTCGATAAGCCCTCCAACCCTTCCTCCCATGAGGTCGTCGCCTGGATCAAGCGCATCCTCCGCGTTGAGAAGACCGGTCACTCCGGCACTCTCGACCCAAAAGTCACCGGCAACCTCATTGTCTGCATCGACCGCGCCACCCGCCTTGTCAAGTCCCAGCAGGGCGCCGGAAAGGAGTACGTCTGCGTTGCTCGCCTCCACTCCGCCGTGCCTGACACCGCCAAGGTCGCTCGCGCCCTCGAGTCCCTCACCGGTGCCGTCTTCCAGCGCCCTCCACTCATCTCCGCCGTCAAGCGGCAGCTCCGCATCCGTACAATCTATGAAAGTAAGCTCCTTGAGTATGACCCTGATAGGCACTTGGTTGTTTTCTGGATATCGTGTGAGGCTGGTACTTATGTTAGGACCATGTGTGTTCATTTGGGGTTGATCCTTGGTGTGGGTGGGCATATGCAGGAGCTTAGGAGGGTTAGGTCTGGGGTCATGGGTGAGAAGGATAACATGGTTACTATGCATGATGTCATGGATGCTCAGTGGGTTTATGATAATTACAGGGATGAGACTTACTTGAGGAGGGTTGTTATGCCCCTTGAGGTTCTCTTGACTAGCTATAAGAGGCTTGTTGTTAAGGACTCTGCTGTTAATGCTATCTGCTATGGTGCCAAGTTGATGATCCCTGGCTTGCTTAGGTTTGAGAATGATATTGAGGTTGGGGAGGAGGTTGTGCTCATGACTACTAAGGGGGAAGCCATTGCCCTTGGCATTGCTGAGATGACTACTGCCGTTATGGCCACTTGTGATCACGGTATTGTGGCCAAGATCAAGAGGGTTGTCATGGATCGAGATACTTATCCAAGGAAGTGGGGTTTGGGCCCCAGAGCATCCATGAAGAAGAAGCTGATATCTGAGGGGAAGCTGGATAAGCATGGGAAGCCGAATGAGAAGACTCCACAGGAGTGGATGAGGAATGTTGTTCTGCCTGCTGGTGGGGATAGCGTGATTGCCGGCTTGGCTGCTGCTCCTGAAGCTAAACCTGAGGCTGTTGATGGGGAAGGGAAGAAGAGGAAGAAGGAGGAAAGTGGTGATAGCCCTACAGCTAAGAAGATCAAAGTTGATGAGGTTGAAGTGGTCGAGAAGGAAGAAAAGGTGAAGCTGAAGAAAGTAAAAGAAGGGGATGTGGAGGTTGAGGTTGAGAAGAAGGAGAAGAAAAAGAAGAAGAAGAAGGATAAAGAAGAGAAAGGTGAAGTGGCTTCATCAGATGAGGAGAAAACCGTAAAGGAGAAGAAGAAGAAGCACAAGGAAGAGGTCGAAAATGGTTCACCAGATGTAGACAAGTCTGAGAAGAAAAAGAAGAAGAAGAAAGACAAAGATGCCAAAGATAATGATGATGCCGCAATAGGCAATGGAAAGGATGACAGTAATGCAGATAGGAGTGAAAAGAAGCATAAGAAAAAGAAGAACAAAGATGCTGAGGAAGAGTAG 1755 0.5043 MSQSESKKKKHHKHKQDDDEQQHGGAAEGGNGVDFLIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPLPSGYSPLKRPLQEYLKYGVLNLDKPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDTAKVARALESLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDRHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGVMGEKDNMVTMHDVMDAQWVYDNYRDETYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLISEGKLDKHGKPNEKTPQEWMRNVVLPAGGDSVIAGLAAAPEAKPEAVDGEGKKRKKEESGDSPTAKKIKVDEVEVVEKEEKVKLKKVKEGDVEVEVEKKEKKKKKKKDKEEKGEVASSDEEKTVKEKKKKHKEEVENGSPDVDKSEKKKKKKKDKDAKDNDDAAIGNGKDDSNADRSEKKHKKKKNKDAEEE* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g0781 584 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 3 583 IPR004802 GO:0006396
Aev04g0781 584 Pfam PUA domain 296 368 IPR002478 GO:0003723
Aev04g0781 584 MobiDBLite consensus disorder prediction 430 584 - -
Aev04g0781 584 Pfam TruB family pseudouridylate synthase (N terminal domain) 109 225 IPR002501 GO:0006396
Aev04g0781 584 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 4 3 583 - -
Aev04g0781 584 Coils Coil 484 504 - -
Aev04g0781 584 Gene3D PUA domain 48 379 IPR036974 GO:0003723
Aev04g0781 584 Pfam DKCLD (NUC011) domain 48 105 IPR012960 -
Aev04g0781 584 ProSiteProfiles PUA domain profile. 295 370 - -
Aev04g0781 584 SMART DKCLD_2 47 105 IPR012960 -
Aev04g0781 584 CDD PseudoU_synth_hDyskerin 87 269 - -
Aev04g0781 584 SUPERFAMILY Pseudouridine synthase 48 293 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Aev04g0781 584 TIGRFAM unchar_dom_2: uncharacterized domain 2 290 367 IPR004521 GO:0003723
Aev04g0781 584 MobiDBLite consensus disorder prediction 437 493 - -
Aev04g0781 584 SUPERFAMILY PUA domain-like 295 376 IPR015947 -
Aev04g0781 584 Gene3D Pseudouridine synthase 81 287 - -
Aev04g0781 584 TIGRFAM CBF5: putative rRNA pseudouridine synthase 55 380 IPR004802 GO:0006396
Aev04g0781 584 SMART pua_5 296 370 IPR002478 GO:0003723
Aev04g0781 584 Pfam tRNA pseudouridylate synthase B C-terminal domain 226 292 IPR032819 -
Aev04g0781 584 MobiDBLite consensus disorder prediction 1 34 - -
Aev04g0781 584 MobiDBLite consensus disorder prediction 499 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g0781 Aev-Chr4 4793540 4795294 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g0781 4 449 NAC Transcription Factor Family AT3G57150 84.598 0.0 743
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g0781 K11131 - gmx:100780706 801.586