LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev04g0690	ATGGCGGCTGAGCAGCTTCCGGAACACTTCAAGTGTCCGATATCGCTGGAGATAATGTCGGACCCAGTCATACTCTCCTCAGGCCACACCTTCGACCGCTCCTCCATCCAGCGCTGGCTTGACGCCGGCCACCGCACCTGCCCAATTACCAAACTCCCCCTCCCCGATCACGCCTCCCTCATCCCCAACCACGCCCTCCGCAGCCTCATTTCCAACTATGCCCCCCCTCTTCCCTCTCCCCCCAAACCCGAAACCCTAATCTCCGCTCTCTCCTCCTCCTCCTCCAAAATCGACTCCCTCAATCACCTCACTCGCCTCTCCAAACGCGACTCCCTCCTCCGCCGCCGACTCACCGACTCCGGAATCGTCCAGCCCCTCCTCTCCTGCGTCGATTCCTCCTCCGCAGCCGACGACGGCGCGCTCCTCCGCGAGAAGGCACTCTCCCTCCTGCTCAACCTCAGCCTCGACGACCACAATAAGGTTGGTCTCGTTGCCGAGGGCGTCGTTTCCCGCCTCGTCGCCGTCCTCTCCACCTCCTCATCCGCCTCCTCCGACTGCCGCGCTGTCGCAGCCACCACGCTCACGAGCCTCGCCGTCGTGGAGGTCAACAAAGCCACCATCGGCGCGTACCCACACGCGATCGAGTCCCTCGTGTCCCTCGTCCGCAACGGGAAGGGGAGAGAGAAGAAGGAAGCTGCGACGGCGCTATACGCACTCTGCTCATTCCCTGACAACCGGCGGAGGGCGGTGGAGTGCGGGGCGGTGCCCGTTCTGCTTCGGAGCGCAGATTCTGGCCTTGAGAGAGCCGTTGAGGTTGTTGGGGTTCTGGCCAAGTGCAAGGAAGGGAGGGAGCAGATGGAGAGGTTCCATGGCTGTGTTCAAATTCTGGGTCGGGTTTTGAGGAATGGAAGCTCGAGGGGTGTTCAGTACGCGCTTCTGGCTCTTTACTCGCTCTGTTGTGGCAGTGAAGCTGCTGCTTTGGAGGCCATCAGAGAAGGGGTTTTGGAAACGTGTCTGGGTTTGCTCGAGGATGACAATGAGAAGGTGAGGAGGAATGCTTCCAGTTTGGTTCAGGTTCTGCGTGGCAATGGATTTTGA	1098	0.6084	MAAEQLPEHFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITKLPLPDHASLIPNHALRSLISNYAPPLPSPPKPETLISALSSSSSKIDSLNHLTRLSKRDSLLRRRLTDSGIVQPLLSCVDSSSAADDGALLREKALSLLLNLSLDDHNKVGLVAEGVVSRLVAVLSTSSSASSDCRAVAATTLTSLAVVEVNKATIGAYPHAIESLVSLVRNGKGREKKEAATALYALCSFPDNRRRAVECGAVPVLLRSADSGLERAVEVVGVLAKCKEGREQMERFHGCVQILGRVLRNGSSRGVQYALLALYSLCCGSEAAALEAIREGVLETCLGLLEDDNEKVRRNASSLVQVLRGNGF*	366

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev04g0690	365	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	1	75	IPR013083	-
	Aev04g0690	365	SUPERFAMILY	ARM repeat	92	360	IPR016024	-
	Aev04g0690	365	CDD	RING-Ubox_PUB	10	51	IPR045210	-
	Aev04g0690	365	Gene3D	-	265	361	IPR011989	-
	Aev04g0690	365	ProSiteProfiles	U-box domain profile.	5	80	IPR003613	GO:0004842\|GO:0016567
	Aev04g0690	365	PANTHER	RING-TYPE E3 UBIQUITIN TRANSFERASE	2	363	-	-
	Aev04g0690	365	SMART	arm_5	203	241	IPR000225	GO:0005515
	Aev04g0690	365	SMART	arm_5	110	155	IPR000225	GO:0005515
	Aev04g0690	365	SMART	arm_5	279	320	IPR000225	GO:0005515
	Aev04g0690	365	SMART	arm_5	322	362	IPR000225	GO:0005515
	Aev04g0690	365	SMART	arm_5	156	199	IPR000225	GO:0005515
	Aev04g0690	365	SMART	Ubox_2	9	73	IPR003613	GO:0004842\|GO:0016567
	Aev04g0690	365	Gene3D	-	82	264	IPR011989	-
	Aev04g0690	365	Pfam	U-box domain	7	73	IPR003613	GO:0004842\|GO:0016567
	Aev04g0690	365	PANTHER	U BOX DOMAIN-CONTAINING	2	363	-	-
	Aev04g0690	365	SUPERFAMILY	RING/U-box	4	73	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev04g0690	Aev-Chr4	4305978	4307075	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aev04g0690	3	362	U-box Gene Family	AT4G21350	58.511	9.50e-142	405

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev04g0690	-		-	adu:107468721	472.626