Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev04g0623 ATGATGGCGGCGGACGGTGGATTTGAGCAGGTACAGTTCGTCGACGACAGCGATGACGCTGCCGGTGACGATAGTAAGTTCGCTATGGACCTCGAATCCTTTCTGAGCGTCCTTGACGAGGATTGCGACGCTTCCGAGAGTAGTCCTGAAGATTCTTCGCTAAAATACGTTTCACCCGGGGAATCTGGCGTTTCACCCGGGGAATCTGGCGTCGATGATAATTGCCAGGTTCACAATGGGAAATTTGTTCTTGACTCTGAACACAGGGGACTGCAATTACAGACTTGCTCTTCTCAAGGTGATTGTGCTGGTGGTTACCAGGACTCATTCTCTGTGGCTGAAAGCAATGAGGTTTGCGACTCAGAAAGGACAGGAGTTTCTAAACTTGAAATGCCTTCTTTCAATATGGACACAGGTTTTCCTGAGTCAAATTCTTCTAATATAGCAGATTTTGGAGACAATTTGAATTTGTGGAAAGGTGGAGATGTGAGCCAGATCAAGCATGCAGTATATGATGTTGAACCTGAATATGCGTCACACAGCCCTATGTTCGAAGATATTGATGTAGATTTTGAAGATTATGGATCTTTGCTCAGAGAAATTATAGGAGTTTCTGGGCAACAGGAAAATGACTCGTGTACTTCTTTTGAAATGTCACCTGTGGATGCTGACAGATCTATGAATGCTGCAACATCAACTGATCCTACAACTTGTCAAGGTTCATATGTTCCCAGTGATGTTGCCGACTACTATCTGTCTATGAACTGTTACCAGGGCACAGATGGTAAACCCATTGGCAACACTTTTGGTTGTCTGCCAAATGCTGTTTCTCCTCAGCTCTGGACTAATGAAGGAATGAAGAGAAAGATGAAGGTAGCAAACTTTGGTGATACAGCACATGCGAGCAGTGGCATTGCTGACGGGATATCTCTTCAAAATAATCAATTTATGTCAGCAGAAAGGGAATATCCATTAAATTTTCCTGGTAATGTGCTCTTTGAAAGTAAGACATCAATGCAAACTTCAACCCGTGGTTCATATATCTCAAGTGAAGGCCGACCACGTTACGTCAAAGCTGAAAGAGATGAACTGAGTACGCCTTACCATAATTCTTCTCAAGGTGATGACACTGAGTTTAGTGTAGGGCAAGAGGTGAAACAAATAACTGGTACGTACCCTTCCGTGGGATGTCAGGGTTTTGAATTTTTCAAACACGGGGATAATGATACAGTTGTGAAAACTGAGAGAGCCAATTGTAATCAGGATCCGATTGATGGAAAAGCATATCAATTTCCTGCAAACATGGGAAAATTGAATTTAAAATCCTTTAACAAATGTTTGTCCACCGCCCAGGCATCAACTGGTAATGAGAAGCAGTTTACTTGTGTTGCAAGTCAAGAAGCGGGAAAAATTATTCAACATAAAAGCATCACTCAAATTTCTAGAGGAAATGTTGAGAGATCCCATCTTAAGGATTCTGATGTTTGTATTATTGAAAACATCAGTCACCCTGCCCCTATAAGCCGATCTGCAGAAGTTAGGACTTCCCTCAATATGTCACAATCTTTAAGATCTAGTTATTCCCAACCTCAGATGGTTGGAGGCTCAAGGCCAAAGGCACGCGACGAGCAGTACATATTACGAGTTGCATTGCAGGATCTATCCCAACCAAAGTCTGAAGTTATTCCACCAGATGGACTGCTAGCAGTTCCTCTTTTACGACATCAGAGAATTGCTTTATCATGGATGGTTCAGAAGGAAACATCTAGTTTGTACTGCTCAGGTGGAATTCTTGCAGATGATCAGGGTCTTGGGAAAACAGTGTCAACTATTGCTTTAATATTAAAGGAGAGAGCTCCAATGCTTAATCAGTGCAATAGTGCTCAAAAAAGTGAATTAGAAACATTGAATTTGGATGCGGATGATGATCTGCTTCTTGAGGATGGTAGAGTGATGAAAGATTATGATGGAGATGTGAATAAAGAATCTAATGGGTGTCAAGATATGTCATGTAGAAGTCCAATCAAGAGTATGAGTTTGTCAGTGCATATGAAAGGTAGGCCATCTGCTGGAACCCTTATTGTTTGTCCAACTAGTGTCCTGCGGCAGTGGGCGGACGAGTTGCACAATAAGGTAACATGCAAAGCTAATCTCTCTGTGCTAGTGTACCATGGAAGCAATCGAACAAAAGATCCTTATGAGCTTGCCAAGTATGATGTTGTTCTGACAACTTATTCAATTGTCAGCATGGAGGTCCCTAAGCAGCCTCTGGTTGACAAAGATGATGATGAAAAAGGAATTTTTGACAATAATACTGTGCCAAGTAAGAAAAGGAAATGTCCTGCTAGTTCTAATAGAGGTGATAAGAAGGGATTGGATAGAACTATGCTTGAGGCTGCTGCTCGCCCTCTTGCGAAGGTGGCTTGGTTTAGAGTTGTCCTAGATGAGGCCCAGAGTATTAAGAATCACAGAACTCAAGTTGCAAGGGCCTGCTGGGGTCTTCGAGCTAAGCGTAGATGGTGCTTATCAGGAACACCCATACAAAATGCTATTGATGATCTCTACAGTTACTTTAGATTTCTAAGATATGATCCATATGCTGTGTACACATCATTCTGTTCTACGATTAAGATCCCAATCAGCAGAAATCCATCAAAAGGGTATAGAAAGCTACAAGCTGTCTTAAAGACAGTAATGTTACGTCGAACAAAAGGCACACTTCTGGATGGGCAACCAATTATTTCTTTGCCACCTAAATATGTGGAGTTGAAAAAAGTGGACTTTTCACAGGAGGAACGTGATTTCTATTCCAGACTAGAGGCTGATTCACGTGCGCAGTTTCAGGAATATGCTGATGCTGGAACTGTGAAGCAGAACTATGTCAACATTTTGTTAATGCTTCTGCGCCTTAGACAAGCCTGTGATCATCCTCTGCTAGTCAAGCGTTACAACTCCAACTCTCTTTGGAAATCTTCAGTTGAAATGGCAAAGAAGCTTCCTCAGGAACAACAGATAGCTCTGCTGAAATGTTTAGAGGCTTCGCTTGCCCTCTGTCGTATTTGTAATGATCCTCCTGAAGATGCTGTTGTTTCAGTTTGTGGTCATGTTTTCTGTAACCAGTGCATTTGTGAACATCTTACTGGTGATGACAATCAGTGCCCTGCTTCAAAATGCAAAAGTCGACTTAGCATGACTTCCGTGTTTTCCAAAGCTACACTGAACAGTTCTCTTTCTGGCCAAGCTTATGATAATTTGTCTGGTTGCTCTGGTTCTGAAATAGGGGAACTTGAGCCTTGTTTTCAGACTCAGTCATTTGATTCTTCAAAAATTAAGGCTGCACTTGAGGTGTTGTGCTCTCTGTCTAAACCGCATAATTCCGAAACAAATTCTGTGCAGAACACTTTTGGGGAAAGTACTGGCTGCCTTGGTAACTCTCCTGGTGCTGACAATGGGAAATCCTTGTCAGCTGAGGTTCAAAATATGTCTGCTGAGAAAAGCTCTAACGTGTCAGTCAATGTAGTCGGGGAGAAAGCTATAGTGTTTTCTCAATGGACAAGGATGCTAGATTTGCTTGAAGTGTCTCTTAAGAATTCTTCGATTCAGTATAGAAGGCTTGACGGAACAATGTCAGTCATTGCAAGGGATAAAGCTGTTAAAGATTTCAACACTCTCCCCGAGGTATCAGTCATGATTATGTCTTTGAAGGCTGCCAGTCTCGGTCTAAACATGGTGGCTGCATGCCACGTTCTTATGCTAGATCTCTGGTGGAATCCTACCACTGAAGATCAAGCAATAGACAGAGCACATCGAATTGGACAGACCCGTCCTGTTACAGTTTTGCGGCTAACTGTGAGAGATACAGTTGAAGACCGCATTCTAGCTCTGCAGCAAAAGAAGCGAAAGATGGTTGCATCTGCGTTTGGGGAGGATGAAACTGGTGGTCGTCAAACGCGCCTTACTGTGGATGATTTAAAATACTTGTTCATGATTTGA 3993 0.4245 MMAADGGFEQVQFVDDSDDAAGDDSKFAMDLESFLSVLDEDCDASESSPEDSSLKYVSPGESGVSPGESGVDDNCQVHNGKFVLDSEHRGLQLQTCSSQGDCAGGYQDSFSVAESNEVCDSERTGVSKLEMPSFNMDTGFPESNSSNIADFGDNLNLWKGGDVSQIKHAVYDVEPEYASHSPMFEDIDVDFEDYGSLLREIIGVSGQQENDSCTSFEMSPVDADRSMNAATSTDPTTCQGSYVPSDVADYYLSMNCYQGTDGKPIGNTFGCLPNAVSPQLWTNEGMKRKMKVANFGDTAHASSGIADGISLQNNQFMSAEREYPLNFPGNVLFESKTSMQTSTRGSYISSEGRPRYVKAERDELSTPYHNSSQGDDTEFSVGQEVKQITGTYPSVGCQGFEFFKHGDNDTVVKTERANCNQDPIDGKAYQFPANMGKLNLKSFNKCLSTAQASTGNEKQFTCVASQEAGKIIQHKSITQISRGNVERSHLKDSDVCIIENISHPAPISRSAEVRTSLNMSQSLRSSYSQPQMVGGSRPKARDEQYILRVALQDLSQPKSEVIPPDGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERAPMLNQCNSAQKSELETLNLDADDDLLLEDGRVMKDYDGDVNKESNGCQDMSCRSPIKSMSLSVHMKGRPSAGTLIVCPTSVLRQWADELHNKVTCKANLSVLVYHGSNRTKDPYELAKYDVVLTTYSIVSMEVPKQPLVDKDDDEKGIFDNNTVPSKKRKCPASSNRGDKKGLDRTMLEAAARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTSFCSTIKIPISRNPSKGYRKLQAVLKTVMLRRTKGTLLDGQPIISLPPKYVELKKVDFSQEERDFYSRLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWKSSVEMAKKLPQEQQIALLKCLEASLALCRICNDPPEDAVVSVCGHVFCNQCICEHLTGDDNQCPASKCKSRLSMTSVFSKATLNSSLSGQAYDNLSGCSGSEIGELEPCFQTQSFDSSKIKAALEVLCSLSKPHNSETNSVQNTFGESTGCLGNSPGADNGKSLSAEVQNMSAEKSSNVSVNVVGEKAIVFSQWTRMLDLLEVSLKNSSIQYRRLDGTMSVIARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRKMVASAFGEDETGGRQTRLTVDDLKYLFMI* 1331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev04g0623 1330 Gene3D - 666 765 IPR038718 -
Aev04g0623 1330 Gene3D - 541 634 IPR038718 -
Aev04g0623 1330 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 556 902 IPR027417 -
Aev04g0623 1330 SUPERFAMILY RING/U-box 1015 1066 - -
Aev04g0623 1330 ProSiteProfiles Zinc finger RING-type profile. 1018 1057 IPR001841 -
Aev04g0623 1330 MobiDBLite consensus disorder prediction 40 72 - -
Aev04g0623 1330 Pfam Helicase conserved C-terminal domain 1172 1272 IPR001650 -
Aev04g0623 1330 ProSitePatterns Zinc finger RING-type signature. 1033 1042 IPR017907 -
Aev04g0623 1330 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 429 1329 - -
Aev04g0623 1330 MobiDBLite consensus disorder prediction 759 791 - -
Aev04g0623 1330 SMART helicmild6 1189 1272 IPR001650 -
Aev04g0623 1330 CDD SF2_C_SNF 1175 1282 - -
Aev04g0623 1330 MobiDBLite consensus disorder prediction 1 25 - -
Aev04g0623 1330 Pfam SNF2-related domain 592 979 IPR000330 GO:0005524|GO:0140658
Aev04g0623 1330 CDD DEXDc_SHPRH-like 572 902 - -
Aev04g0623 1330 Gene3D - 1097 1329 IPR027417 -
Aev04g0623 1330 Gene3D - 775 915 IPR038718 -
Aev04g0623 1330 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1165 1325 IPR001650 -
Aev04g0623 1330 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 910 1329 IPR027417 -
Aev04g0623 1330 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 587 864 IPR014001 -
Aev04g0623 1330 SMART ultradead3 568 879 IPR014001 -
Aev04g0623 1330 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 429 1329 - -
Aev04g0623 1330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 979 1083 IPR013083 -
Aev04g0623 1330 Pfam Zinc finger, C3HC4 type (RING finger) 1018 1054 IPR018957 GO:0046872
Aev04g0623 1330 SMART ring_2 1018 1056 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev04g0623 Aev-Chr4 3878384 3886329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev04g0623 495 1329 RAD5 or RAD16-like Gene Family AT1G61140 62.249 0.0 993
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aev04g0623 SNF2_N 7.6e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev04g0623 - - gmx:100805307 1699.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g0053 03 636258 644479 Aev04g0623 04 3878384 3886329 PCT